fix: Drop imagej LUTs of size 24*x
#5426
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - feature_prepare/** | |
| - main | |
| pull_request: | |
| branches: | |
| - '**' | |
| workflow_dispatch: | |
| concurrency: | |
| group: test-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| actionlint: | |
| name: Action lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check workflow files | |
| run: | | |
| bash <(curl https://raw.githubusercontent.com/rhysd/actionlint/main/scripts/download-actionlint.bash) | |
| ./actionlint -color -ignore SC2129 | |
| shell: bash | |
| download_data: | |
| name: Download test data | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - shell: bash | |
| run: bash build_utils/download_data.sh | |
| - name: Upload test data | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test_data | |
| path: test_data | |
| retention-days: 5 | |
| base-test: | |
| name: Base py${{ matrix.python_version }} | |
| if: github.event_name == 'pull_request' | |
| uses: ./.github/workflows/base_test_workflow.yml | |
| needs: download_data | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python_version: ["3.9", "3.10", "3.11", "3.12"] | |
| os: ["ubuntu-24.04"] | |
| qt_backend: ["PyQt5"] | |
| tox_args: [ "" ] | |
| include: | |
| - python_version: "3.11" | |
| os: "macos-13" | |
| qt_backend: "PyQt5" | |
| - python_version: "3.12" | |
| os: "macos-14" | |
| qt_backend: "PyQt6" | |
| - python_version: "3.11" | |
| os: "windows-latest" | |
| qt_backend: "PyQt5" | |
| - python_version: "3.10" | |
| os: "ubuntu-20.04" | |
| qt_backend: "PySide2" | |
| - python_version: "3.10" | |
| os: "ubuntu-24.04" | |
| qt_backend: "PySide6" | |
| - python_version: "3.12" | |
| os: "ubuntu-22.04" | |
| qt_backend: "PyQt6" | |
| - python_version: "3.10" | |
| os: "ubuntu-22.04" | |
| qt_backend: "PyQt5" | |
| pydantic: "_pydantic_1" | |
| with: | |
| test_data: True | |
| python_version: ${{ matrix.python_version }} | |
| os: ${{ matrix.os }} | |
| qt_backend: ${{ matrix.qt_backend }} | |
| tox_args: ${{ matrix.tox_args }} | |
| pydantic: ${{ matrix.pydantic }} | |
| base-test-main: | |
| name: Base py${{ matrix.python_version }} | |
| if: github.event_name == 'push' | |
| uses: ./.github/workflows/base_test_workflow.yml | |
| needs: download_data | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python_version: ["3.9", "3.10", "3.11", "3.12"] | |
| os: ["ubuntu-24.04", "macos-14", "windows-2022"] | |
| qt_backend: ["PySide2", "PyQt5"] | |
| include: | |
| - python_version: "3.12" | |
| qt_backend: "PyQt5" | |
| os: "ubuntu-22.04" | |
| - python_version: "3.10" | |
| os: "ubuntu-22.04" | |
| qt_backend: "PySide6" | |
| - python_version: "3.11" | |
| os: "ubuntu-22.04" | |
| qt_backend: "PyQt6" | |
| - python_version: "3.11" | |
| os: "ubuntu-22.04" | |
| qt_backend: "PyQt5" | |
| pydantic: "_pydantic_1" | |
| exclude: | |
| - python_version: "3.11" | |
| qt_backend: "PySide2" | |
| - python_version: "3.12" | |
| qt_backend: "PySide2" | |
| - os: "macos-14" | |
| qt_backend: "PySide2" | |
| - os: "macos-14" | |
| python_version: "3.9" | |
| with: | |
| test_data: True | |
| python_version: ${{ matrix.python_version }} | |
| os: ${{ matrix.os }} | |
| qt_backend: ${{ matrix.qt_backend }} | |
| pydantic: ${{ matrix.pydantic }} | |
| artifact_suffix: "-main" | |
| pytest_args: "-v" | |
| test_coverage: | |
| needs: download_data | |
| uses: ./.github/workflows/base_test_workflow.yml | |
| with: | |
| test_data: True | |
| python_version: "3.12" | |
| tox_args: "-e py312-PyQt5-coverage" | |
| coverage: true | |
| test_minimal: | |
| name: Test PartSeg minimal | |
| needs: download_data | |
| uses: ./.github/workflows/base_test_workflow.yml | |
| with: | |
| test_data: True | |
| python_version: "3.9" | |
| tox_args: "-e py39-PyQt5-minimal" | |
| coverage: true | |
| coverage_prepare: | |
| name: Prepare coverage | |
| runs-on: ubuntu-latest | |
| needs: [test_coverage, test_minimal] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| cache-dependency-path: pyproject.toml | |
| cache: 'pip' | |
| - name: Install Dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install codecov | |
| - name: Download coverage data | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: cov-reports-* | |
| path: coverage | |
| merge-multiple: true | |
| - name: combine coverage data | |
| run: | | |
| python -Im coverage combine coverage | |
| python -Im coverage xml -o coverage.xml | |
| # Report and write to summary. | |
| python -Im coverage report --format=markdown --skip-empty --skip-covered >> "$GITHUB_STEP_SUMMARY" | |
| - name: Upload coverage artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage_xml | |
| path: coverage.xml | |
| retention-days: 5 | |
| - name: Upload coverage data | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| test_conda: | |
| name: Test PartSeg conda | |
| runs-on: ubuntu-24.04 | |
| needs: download_data | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| use-mamba: true | |
| channels: conda-forge | |
| channel-priority: strict | |
| python-version: "3.12" | |
| - uses: tlambert03/setup-qt-libs@v1 | |
| - name: Download test data | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test_data | |
| path: test_data | |
| - name: Use mamba solver | |
| shell: "bash -el {0}" | |
| run: | | |
| conda install -n base conda-libmamba-solver | |
| conda config --set solver libmamba | |
| - name: Install dependencies | |
| shell: "bash -el {0}" | |
| run: | | |
| mamba install -y "tox-conda>=0.10.0" | |
| - name: List environment packages | |
| shell: "bash -el {0}" | |
| run: conda list | |
| - name: create environment | |
| shell: "bash -el {0}" | |
| run: bash build_utils/create_environment_yml.sh | |
| - name: Upload environment file | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: environment | |
| path: environment.yml | |
| retention-days: 5 | |
| - name: patch tox.ini | |
| shell: "bash -el {0}" | |
| run: sed -e "s/{sys_platform}/{platform}/g" tox.ini -i | |
| - name: Test with tox | |
| uses: aganders3/headless-gui@v2 | |
| with: | |
| run: conda run -n test --no-capture-output tox -e py312-PySide2-conda | |
| timeout-minutes: 60 | |
| check-package: | |
| name: Build & inspect our package. | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: hynek/build-and-inspect-python-package@v2 |