diff --git a/CHANGELOG b/CHANGELOG index db418ed..2b6b1ad 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,3 +1,6 @@ +0.16.5 + - tests: add test for files that contain force data but no spring + constant 0.16.4 - enh: implement `AFMData.columns_innate` which is a list of columns present in the original data file diff --git a/tests/data/fmt-afm-workshop-fd_single_2021-10-22_14.16.csv b/tests/data/fmt-afm-workshop-fd_single_2021-10-22_14.16.csv new file mode 100644 index 0000000..11aeef6 --- /dev/null +++ b/tests/data/fmt-afm-workshop-fd_single_2021-10-22_14.16.csv @@ -0,0 +1,1231 @@ +Force-Distance Curve +File Format: 3 + +Date: 22 October 2020 +Time: 14:16:20 +Mode: Single +Point: 1 +X, um: 0.500000 +Y, um: 0.500000 + +Extend Z-Sense(nm),Extend Force(nN),Retract Z-Sense(nm),Retract Force(nN) +4129.0327,0.0531,5345.0327,0.0709 +4130.0327,0.0531,5344.0327,0.0707 +4131.0327,0.0531,5343.0327,0.0707 +4132.0327,0.0530,5342.0327,0.0705 +4133.0327,0.0530,5341.0327,0.0704 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+5338.0327,0.0703,4136.0327,0.0531 +5339.0327,0.0703,4135.0327,0.0531 +5340.0327,0.0703,4134.0327,0.0531 +5341.0327,0.0704,4133.0327,0.0531 +5342.0327,0.0705,4132.0327,0.0532 +5343.0327,0.0707,4131.0327,0.0532 +5344.0327,0.0708,4130.0327,0.0533 +5345.0327,0.0708,4129.0327,0.0534 + + + diff --git a/tests/test_fmt_workshop.py b/tests/test_fmt_workshop.py index 6aa0e4d..0e85eb5 100644 --- a/tests/test_fmt_workshop.py +++ b/tests/test_fmt_workshop.py @@ -116,6 +116,18 @@ def test_single_open_issue_17_valid_metadata(): assert data.metadata["sensitivity"] == .01e-6 +def test_single_open_with_precomputed_force(): + # This file contains force data in Newtons but no tip position. + # afmformats should not request additional metadata, although + # nanite may, because it needs it for the computation of the + # tip position. + tf = data_path / "fmt-afm-workshop-fd_single_2021-10-22_14.16.csv" + data = afmformats.load_data(tf)[0] + assert "tip position" not in data + assert "force" in data + assert "spring constant" not in data.metadata + + if __name__ == "__main__": # Run all tests _loc = locals()