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r.yml
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name: R-CMD-check
on:
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'}
- {os: ubuntu-20.04, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-20.04, r: 'release'}
- {os: ubuntu-20.04, r: 'oldrel/1'}
- {os: macos-latest, r: 'release'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- name: Checkout repo
uses: actions/checkout@v2
with:
# Number of commits to fetch. 0 indicates all history for all branches and tags.
# Default: 1
fetch-depth: 0
- name: Setup R
uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
# Tool options
tools: true
# Install linux system dependencies
linux-install-dependencies-debian: true
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
shell: Rscript {0}
- name: Cache R packages
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: Install dependencies
run: |
remotes::install_cran("covr")
remotes::install_deps(dependencies = TRUE)
remotes::install_github("jimhester/lintr")
shell: Rscript {0}
- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: |
options(covr.gcov = "/usr/bin/gcov")
covr::codecov()
shell: Rscript {0}
- name: Test coverage
if: matrix.config.os == 'macos-latest' || matrix.config.r != 'devel'
run: covr::codecov()
shell: Rscript {0}
- name: Lint
if: matrix.config.os == 'macos-latest'
run: lintr::lint_package()
shell: Rscript {0}