Batch fertilizer concentrations

src/ontology/modules/chemical_area_density.csv

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+defined_class,defined_class_label,chemical,chemical_label,subclass,subclass_label
+AGRO:00040000,,CHEBI:62982,ammonium dihydrogen phosphate,AGRO:00000169,'ammonium area density'
+AGRO:00040001,,CHEBI:149425,ammonium magnesium phosphate,AGRO:00000169,'ammonium area density'
+AGRO:00040002,,CHEBI:149427,ammonium magnesium phosphate hexahydrate,AGRO:00000169,'ammonium area density'
+AGRO:00040003,,CHEBI:63038,ammonium nitrate,AGRO:00000169,'ammonium area density'
+AGRO:00040004,,CHEBI:147420,ammonium nitrate phosphate,AGRO:00000169,'ammonium area density'
+AGRO:00040005,,CHEBI:147419,ammonium phosphate sulfate,AGRO:00000169,'ammonium area density'
+AGRO:00040006,,CHEBI:147408,ammonium polyphosphate,AGRO:00000169,'ammonium area density'
+AGRO:00040007,,CHEBI:62946,ammonium sulfate,AGRO:00000169,'ammonium area density'
+AGRO:00040008,,CHEBI:140457,ammonium sulfate nitrate,AGRO:00000169,'ammonium area density'
+AGRO:00040009,,CHEBI:91240,ammonium sulfate urea,AGRO:00000169,'ammonium area density'
+AGRO:00040010,,CHEBI:147402,ammonium thiosulfate,AGRO:00000169,'ammonium area density'
+AGRO:00040011,,CHEBI:91238,calcium ammonium nitrate,AGRO:00000170,'calcium area density'
+AGRO:00040012,,CHEBI:35433,calcium bis(dihydrogenphosphate),AGRO:00000170,'calcium area density'
+AGRO:00040013,,CHEBI:3311,calcium carbonate,AGRO:00000170,'calcium area density'
+AGRO:00040014,,CHEBI:64301,calcium cyanamide,AGRO:00000170,'calcium area density'
+AGRO:00040015,,CHEBI:3312,calcium dichloride,AGRO:00000170,'calcium area density'
+AGRO:00040016,,CHEBI:64205,calcium nitrate,AGRO:00000170,'calcium area density'
+AGRO:00040017,,CHEBI:31344,calcium oxide,AGRO:00000170,'calcium area density'
+AGRO:00040018,,CHEBI:23414,copper(II) sulfate,AGRO:00000177,'copper area density'
+AGRO:00040019,,CHEBI:147423,cyanoguanidine,PATO:0001351,area density
+AGRO:00040020,,CHEBI:63051,diammonium hydrogen phosphate,AGRO:00000169,'ammonium area density'
+AGRO:00040021,,CHEBI:48838,gypsum,PATO:0001351,area density
+AGRO:00040022,,ENVO:00002053,limestone,PATO:0001351,area density
+AGRO:00040023,,CHEBI:31793,magnesium carbonate,AGRO:00000174,'magnesium area density'
+AGRO:00040024,,CHEBI:64736,magnesium nitrate,AGRO:00000174,'magnesium area density'
+AGRO:00040025,,CHEBI:31794,magnesium oxide,AGRO:00000174,'magnesium area density'
+AGRO:00040026,,CHEBI:32599,magnesium sulfate,AGRO:00000174,'magnesium area density'
+AGRO:00040027,,CHEBI:26078,phosphoric acid,AGRO:00000160,'phosphorus area density'
+AGRO:00040028,,CHEBI:131526,potassium carbonate,AGRO:00000201,'potassium area density'
+AGRO:00040029,,CHEBI:32588,potassium chloride,AGRO:00000201,'potassium area density'
+AGRO:00040030,,CHEBI:63036,potassium dihydrogen phosphate,AGRO:00000201,'potassium area density'
+AGRO:00040031,,CHEBI:148438,potassium metaphosphate,AGRO:00000201,'potassium area density'
+AGRO:00040032,,CHEBI:63043,potassium nitrate,AGRO:00000201,'potassium area density'
+AGRO:00040033,,CHEBI:63005,sodium nitrate,PATO:0001351,area density
+AGRO:00040034,,CHEBI:77775,sodium selenate,PATO:0001351,area density
+AGRO:00040035,,CHEBI:16199,urea,PATO:0001351,area density
+AGRO:00040036,,CHEBI:88276,urea ammonium nitrate,AGRO:00040035,'urea area density'
+AGRO:00040037,,CHEBI:35176,zinc sulfate,AGRO:00000176,'zinc area density'

src/ontology/modules/chemical_entities.csv

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+defined_class,defined_class_label,attribute,attribute_label,entity,entity_label
+AGRO:00050000,,,,,

src/ontology/modules/entity_attribute_location.csv

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+defined_class,defined_class_label,attribute,attribute_label,entity,entity_label,location,location_label
+AGRO:00030000,,,,,,,

src/ontology/patterns/chemical_area_density.yaml

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+pattern_name: agro/patterns/chemical_area_density
+contributors:
+- https://orcid.org/0000-0002-2627-0696
+
+#### owl_entity Dictionaries
+classes:
+  chemical entity: CHEBI:24431
+  area density: PATO:0001351
+
+relations:
+  inheres in: RO:0000052
+
+# Var types
+vars:
+  chemical: "'chemical entity'"
+  subclass: "'subclass'"
+
+subClassOf: 
+
+  text: '%s'
+  vars: 
+  - 'subclass'
+
+annotationProperties:
+  exact_synonym: oio:hasExactSynonym
+
+# OBO fields 
+name:
+  text: "%s area density"
+  vars:
+    - chemical
+
+# Specifying axioms:
+annotations:
+  - annotationProperty: exact_synonym
+    text: "amount of %s applied"
+    vars:
+      - chemical
+
+def:
+  text: "An area density quality which inheres in %s by virtue of some influence exerted by the mass of %s applied in a given surface area."
+  vars:
+    - chemical
+    - chemical
+
+equivalentTo:
+  text: "'inheres in' some %s"
+  vars:
+    - chemical
+
+comment:
+  text: "Generated by pattern 'agro/patterns/chemical_area_density', using dosdp-tools and ROBOT tool"
+

src/ontology/patterns/chemical_entities.yaml

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+pattern_name: agro/patterns/chemical_entities
+
+classes: 
+
+relations:
+  part of: BFO:0000050
+  inheres in: RO:0000052
+
+vars: 
+  chemical: "'chemical'"
+  entity: "owl:Thing"
+  area density: "'area density'"
+
+name:
+  text: "%s %s"
+  vars:
+    - chemical
+    - area density
+
+annotationProperties:
+  exact_synonym: oio:hasExactSynonym
+
+annotations: 
+  - annotationProperty: exact_synonym
+    text: "amount of %s applied"
+    vars:
+      - chemical
+
+def: 
+  text: "An %s quality which inheres in %s by virtue of some influence exerted by the mass of %s applied in a given surface area."
+  vars:
+    - area density
+    - chemical
+    - chemical

src/ontology/patterns/entity_attribute_location.yaml

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+pattern_name: agro/patterns/entity_attribute_location
+
+classes:
+
+relations:
+  part of: BFO:0000050
+  inheres in: RO:0000052
+
+vars:
+  attribute: "owl:Thing"
+  entity: "owl:Thing"
+  location: "owl:Thing"
+
+name:
+  text: "%s of %s in %s"
+  vars:
+    - attribute
+    - entity
+    - location
+
+annotationProperties:
+  exact_synonym: oio:hasExactSynonym
+
+annotations:
+  - annotationProperty: exact_synonym
+    text: "%s %s %s"
+    vars:
+      - location
+      - entity
+      - attribute
+
+def:
+  text: "The %s of a %s when measured in %s."
+  vars:
+    - attribute
+    - entity
+    - location
+
+equivalentTo:
+  text: "%s and 'inheres in' some (%s and 'part of' some %s)"
+  vars:
+    - attribute
+    - entity
+    - location