Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Animal NTRs from FOODON #175

Merged
merged 3 commits into from
Jul 19, 2022
Merged

Animal NTRs from FOODON #175

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
dbdd6d8
Added animal terms from FOODON
celineaubert Jul 7, 2022
09839d7
Added last terms
celineaubert Jul 18, 2022
ca1dcca
Merge branch 'master' into animal-NTRs-from-FOODON
marieALaporte Jul 19, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
157 changes: 157 additions & 0 deletions src/ontology/agro-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -617,6 +617,25 @@ Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000663>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000665>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000666>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000667>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000668>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000669>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000670>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000671>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000672>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000673>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000674>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000675>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000676>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000677>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000678>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000679>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000680>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000681>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000682>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000690>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000691>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000692>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000693>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000683>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000684>))
Declaration(Class(<http://purl.obolibrary.org/obo/AGRO_00000685>))
Expand Down Expand Up @@ -5351,6 +5370,144 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/AGRO_00000667>
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000667> "net pot area harvested"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000667> <http://purl.obolibrary.org/obo/AGRO_00000302>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000668> (animal harvesting equipment)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000668> "Equipment used to harvest an animal or its production which is meant for consumption."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000668> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000668> "animal harvesting equipment"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000668> <http://purl.obolibrary.org/obo/AGRO_00000416>)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000668> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/AGRO_00000682>))

# Class: <http://purl.obolibrary.org/obo/AGRO_00000669> (plucking belt)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000669> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000669> "plucking belt"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000669> <http://purl.obolibrary.org/obo/AGRO_00000668>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000670> (egg belt)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000670> "A conveyor belt used to collect eggs in an industrial egg production environment."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000670> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000670> "egg collection belt"@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000670> "egg belt"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000670> <http://purl.obolibrary.org/obo/AGRO_00000668>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000671> (animal transportation equipment)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000671> "An equipment used in the transportation of an animal."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000671> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000671> "animal transportation equipment"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000671> <http://purl.obolibrary.org/obo/AGRO_00000416>)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000671> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000056> <http://purl.obolibrary.org/obo/AGRO_00000681>))

# Class: <http://purl.obolibrary.org/obo/AGRO_00000672> (chick pad)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000672> "The lining of a box or crate used to transport chicks (juvenile chickens)."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000672> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000672> "chick pad"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000672> <http://purl.obolibrary.org/obo/AGRO_00000671>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000673> (dead haul truck)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000673> "A truck used to haul dead animal from an abattoir."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000673> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000673> "dead haul truck"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000673> <http://purl.obolibrary.org/obo/AGRO_00000671>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000674> (live haul truck)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000674> "A truck used to haul live animals."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000674> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000674> "live haul truck"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000674> <http://purl.obolibrary.org/obo/AGRO_00000671>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000675> (animal feeding equipment)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000675> "An equipment used to feed and water livestock animals."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000675> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000675> "animal feeding equipment"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000675> <http://purl.obolibrary.org/obo/AGRO_00000416>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000676> (feed pan)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000676> "A bowl or pan which is used to feed livestock."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000676> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000676> "feed pan"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000676> <http://purl.obolibrary.org/obo/AGRO_00000675>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000677> (watering bowl)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000677> "A bowl from which animals can drink."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000677> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000677> "watering bowl"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000677> <http://purl.obolibrary.org/obo/AGRO_00000675>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000678> (chick box)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000678> "The box which is used to transport chick (juvenile chicken)."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000678> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000678> "chick box"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000678> <http://purl.obolibrary.org/obo/AGRO_00000671>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000679> (animal feeder)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000679> "An animal feeding equipment that has a food storage unit and which enables livestock to obtain their own food."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000679> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000679> "animal feeder"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000679> <http://purl.obolibrary.org/obo/AGRO_00000675>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000680> (animal drinker)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Anoosha Sehar") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000680> "An animal feeding equipment that has a water storage unit which enables livestock to obtain their own water."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000680> <http://orcid.org/0000-0001-5275-8866>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000680> "animal drinker"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000680> <http://purl.obolibrary.org/obo/AGRO_00000675>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000681> (animal transportation process)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Transportation_of_animals") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000681> "An agricultural process in which the intentional movement of an animal by transport occurs."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000681> <http://orcid.org/0000-0001-5275-8866>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000681> "animal transport"@en)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000681> "animal transportation"@en)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/AGRO_00000681> "transportation of animals"@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000681> "animal transportation process"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000681> <http://purl.obolibrary.org/obo/AGRO_00002071>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000682> (animal harvesting process)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000682> "An agricultural process in which an animal is harvested for consumption."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000682> <http://orcid.org/0000-0001-6284-4821>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000682> "animal harvesting process"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000682> <http://purl.obolibrary.org/obo/AGRO_00002071>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000690> (animal processing waste material)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Animal_product >) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000690> "Waste material produced when an animal is processed for consumption."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000690> <http://orcid.org/0000-0001-5275-8866>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000690> "animal processing waste material"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000690> <http://purl.obolibrary.org/obo/ENVO_00002873>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000691> (poultry processing waste material)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000691> "Waste material produced when poultry is processed for consumption."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000691> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000691> "poultry processing waste material"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000691> <http://purl.obolibrary.org/obo/AGRO_00000690>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000692> (weep fluid)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000692> "A fluid that leaks from a bag containing an animal carcass, and can include water, chemicals and anatomical fluids."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000692> <http://orcid.org/0000-0002-1107-9135>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000692> "weep fluid"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000692> <http://purl.obolibrary.org/obo/AGRO_00000690>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000693> (poultry plucking water)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Emma Griffiths") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000693> "A type of water obtained from rinsing poultry carcasses during the feather plucking process."@en)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/AGRO_00000693> <http://orcid.org/0000-0001-5275-8866>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/AGRO_00000693> "poultry plucking water"@en)
SubClassOf(<http://purl.obolibrary.org/obo/AGRO_00000693> <http://purl.obolibrary.org/obo/AGRO_00000691>)

# Class: <http://purl.obolibrary.org/obo/AGRO_00000683> (forest garden)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Crawford, Martin (2010). Creating a Forest Garden. Green Books. https://www.agroforestry.co.uk/wp-content/uploads/product/creating-a-forest-garden-2/Creating_a_forest_garden.pdf") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/AGRO_00000683> "A carefully designed and maintained ecosystem of useful plants modelled on the structure of young natural woodland, utilising plants of direct and indirect benefit to people – often edible plants. Forest garden can be cultivated on any scale."@en)
Expand Down