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Planned Data Release: V17 #732
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Note: This release will ONLY contain histology file changes |
@baileyckelly @allisonheath - can we add an estimated timeframe for this on the ticket? Thanks :) |
@jaclyn-taroni, since #743 was merged, would you like us to add these results to the |
I suppose my preference would be to use uncorrected, but that opinion is not strongly held. Can we get a time frame for this? There are items listed here ( I also know (but I didn't find this documented - apologies if I missed something) there are changes to What order should these items be addressed in? Should we include anything that's ready now and deal with the |
#608 is blocked, so that will be added to V17 |
I ran the molecular-subtyping-pathology ( last run on July 2nd ) module for v17 release which contains subtyping results compiled from the following modules and pathology updates:
|
I've realized the TCGA consensus and tmb files have never been added to the data release and it would be ideal to keep these tracked. These files need to be added (they get created by the
Here's a zip file that contains all three of those files: |
thanks @cansavvy - I just let @yuankunzhu know! |
thanks. will include those files. |
@jaclyn-taroni we are shooting for a PR for Tuesday, Sep 8 for this! |
pbta-snv-mutation-tmb-coding.tsv.zip Here is the most up to date version of the tmb for pbta given the changes done with #727 and #728 |
@cansavvy to confirm - is this replacing |
This is a replacement for that file. |
ok thanks! i will rename to match :) |
What data file(s) does this issue pertain to?
pbta-histologies.tsv
What release are you using?
V15/V16
Put your question or report your issue here.
Update histologies file to include additional information per tickets:
was planned for v16:
#607#610#637
#509
#608
#245
new:
#631 LGAT subtyping
#623 EWS subtyping
Who is going to work on this:
@baileyckelly
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