Experiments for Usability Evaluations

[dvenprasad]

Context

For usability evaluations, I need to set up a scenario and have the user perform different tasks in the context of the scenario. @jaclyn-taroni suggested a scenario where the user will have to search for the term "imatinib"

Problem or idea

We need to ensure that the search term "imatinib" will return at least 6-10 results.
These are the accessions returned by GEO,ArrayExpress, and SRA for the search term 'imatinib' which is also part of the list in #223

E-MEXP-433
E-MTAB-2594
E-TABM-585
E-TABM-702
GSE22852
GSE30416

Solution or next step

We will need to keep a tab on these accessions and make a note whether they are processed or not.

Also, the number of experiments is on the lower end of what I would like. Would it be possible to explore an alternate scenario?

[jaclyn-taroni]

This seems low and incomplete to me. For instance, I would expect GSE38310 to be in this list because it is on GPL6947 which we support: https://github.com/AlexsLemonade/refinebio/blob/dev/config/supported_microarray_platforms.csv#L596.

@dvenprasad can you determine if there might be an error on your end or upstream as part of this list #223 (comment) ?

[dvenprasad]

Okay, that was my bad. They were listed in E-GEOD-XXXX format.
In addition to the accessions above, these are also part of the list in #222

E-GEOD-10912
E-GEOD-14671
E-GEOD-15237
E-GEOD-15892
E-GEOD-17480
E-GEOD-1922
E-GEOD-20876
E-GEOD-20987
E-GEOD-21315
E-GEOD-21664
E-GEOD-22433
E-GEOD-22852
E-GEOD-24813
E-GEOD-2535
E-GEOD-28698
E-GEOD-30883
E-GEOD-33075
E-GEOD-34900
E-GEOD-38310
E-GEOD-39335
E-GEOD-43225
E-GEOD-44810
E-GEOD-46928
E-GEOD-51698
E-GEOD-5258
E-GEOD-53202
E-GEOD-53633
E-GEOD-56472
E-GEOD-57800
E-GEOD-57805
E-GEOD-57811
E-GEOD-57815
E-GEOD-57822
E-GEOD-6338
E-GEOD-64762
E-GEOD-7114

[jaclyn-taroni]

Is this updated list enough experiments for the evals?

[dvenprasad]

Yes, this will be enough for testing.

[dvenprasad]

@Miserlou @kurtwheeler @dongbohu These accessions should be part of the list of experiments we process first.

[jaclyn-taroni]

Related: #54

[jaclyn-taroni]

@kurtwheeler will run in staging