intro.bib

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% Encoding: Cp1252



@article{Finch,
author = {David V. Finch},
title = {{Cone Beam Reconstruction with Sources on a Curve}},
journal = {SIAM Journal on Applied Mathematics},
volume = {45},
number = {4},
pages = {665-673},
year = {1985},
doi = {10.1137/0145039},

URL = { 
        https://doi.org/10.1137/0145039
    
},
eprint = { 
        https://doi.org/10.1137/0145039
    
}

}




@Misc{Adler2013,
  Title                    = {Modeling {EIT} current flow in a human thorax model},

  Author                   = {Adler, A.},
  HowPublished             = {\href{http://eidors3d.sourceforge.net/tutorial/netgen/extrusion/thoraxmdl.shtml}{EIDORS documentation}},
  Month                    = {Apr},
  Note                     = {Accessed Feb. 2015},
  Year                     = {2013},

  Owner                    = {Ander},
  Timestamp                = {2015.02.17}
}

@Electronic{CRUK2014,
  Title                    = {Lung cancer survival statistics},
  Author                   = {{Cancer research UK}},
  HowPublished             = {\href{http://www.cancerresearchuk.org/cancer-info/cancerstats/types/lung/survival/}{Cancer Research UK web page: survival statistics}},
  Url                      = {http://www.cancerresearchuk.org/cancer-info/cancerstats/types/lung/survival/},
    Note                     = {Accessed Jul. 2017},

  Year                     = {2014},

  Owner                    = {Ander},
  Timestamp                = {2015.02.11}
}

@Electronic{CRUK2014b,
  Title                    = {Types of treatment for lung cancer},
  Author                   = {{Cancer research UK}},
  HowPublished             = {\href{http://www.cancerresearchuk.org/about-cancer/type/lung-cancer/treatment/which-treatment-for-lung-cancer}{Cancer Research UK web page: treatment}},
  Url                      = {http://www.cancerresearchuk.org/about-cancer/type/lung-cancer/treatment/which-treatment-for-lung-cancer},
  Year                     = {2014},

  Owner                    = {Ander},
  Timestamp                = {2015.02.12}
}

@Article{Cole2014,
  Title                    = {Motion Management for Radical Radiotherapy in Non-small Cell Lung Cancer },
  Author                   = {Cole, A.J. and Hanna, G.G. and Jain, S. and O'Sullivan, J. M.},
  Journal                  = {Clinical Oncology},
  Year                     = {2014},
  Number                   = {2},
  Pages                    = {67 - 80},
  Volume                   = {26},

  Abstract                 = {Abstract Intrafraction tumour motion is an issue that is of increased interest in the era of image-guided radiotherapy. It is particularly relevant for non-small cell lung cancer, for which a number of recent developments are in use to aid with motion management in the delivery of radical radiotherapy. The ability to deliver hypofractionated ablative doses, such as in stereotactic radiotherapy, has been aided by improvements in the ability to analyse tumour motion and amend treatment delivery. In addition, accounting for tumour motion can enable dose escalation to occur by reducing the normal tissue being irradiated by virtue of a reduction in target volumes. Motion management for lung tumours incorporates five key components: imaging, breath-hold techniques, abdominal compression, respiratory tracking and respiratory gating. These will be described, together with the relevant benefits and associated complexities. Many studies have described improved dosimetric coverage and reduced normal tissue complication probability rates when using motion management techniques. Despite the widespread uptake of many of these techniques, there is a paucity of literature reporting improved outcome in overall survival and local control for patients whenever motion management techniques are used. This overview will review the extent of lung tumour motion, ways in which motion is detected and summarise the key methods used in motion management. },
  Doi                      = {http://dx.doi.org/10.1016/j.clon.2013.11.001},
  ISSN                     = {0936-6555},
  Keywords                 = {Four-dimensional computed tomography},
  Owner                    = {Ander},
  Timestamp                = {2015.02.25},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S093665551300438X}
}

@Article{Comis2003,
  Title                    = {A brief history of the research and treatment of lung cancer from 1970 to 2000},
  Author                   = {Comis, Robert L.},
  Journal                  = {International Journal of Clinical Oncology},
  Year                     = {2003},
  Number                   = {4},
  Pages                    = {230-233},
  Volume                   = {8},

  Doi                      = {10.1007/s10147-003-0337-5},
  ISSN                     = {1341-9625},
  Keywords                 = {Lung cancer; Research; Clinical trials; Targeted therapies},
  Language                 = {English},
  Owner                    = {Ander},
  Publisher                = {Springer-Verlag},
  Timestamp                = {2015.02.12},
  Url                      = {http://dx.doi.org/10.1007/s10147-003-0337-5}
}

@Article{Fayad2011,
  Title                    = {Technical Note: Correlation of respiratory motion between external patient surface and internal anatomical landmarks},
  Author                   = {Fayad, H. and Pan, T. and Fran\c{c}ois Clement, J. and Visvikis, D.},
  Journal                  = {Med Phys},
  Year                     = {2011},
  Number                   = {6},
  Pages                    = {3157-3164},
  Volume                   = {38},

  Doi                      = {http://dx.doi.org/10.1118/1.3589131},
  Owner                    = {Ander},
  Timestamp                = {2015.02.17},
  Url                      = {http://scitation.aip.org/content/aapm/journal/medphys/38/6/10.1118/1.3589131}
}

@Misc{GLOBOCAN2010,
  Title                    = {{GLOBOCAN 2012 v1.0, Cancer Incidence and Mortality Worldwide: IARC CancerBase No. 11 }},

  Author                   = {Ferlay, J and Soerjomataram, I and Ervik, M and Dikshit, R and Eser, S and Mathers, C and Rebelo, M and Parkin, DM and Forman, D and Bray, F},
  HowPublished             = {Available from: \href{http://globocan.iarc.fr}{http://globocan.iarc.fr}, accessed on day/month/year.},
  Note                     = {Lyon, France: International Agency for Research on Cancer},
  Year                     = {2010},

  Owner                    = {Ander},
  Timestamp                = {2015.02.12}
}

@Article{Gierga2005,
  Title                    = {The correlation between internal and external markers for abdominal tumors: implications for respiratory gating},
  Author                   = {Gierga, D.P. and Brewer, J. Sharp, G.C. and Betke, M. and Willett, C.G. and Chen, G.T.},
  Journal                  = {Int J Radiat Oncol Biol Phys},
  Year                     = {2005},

  Month                    = {Apr},
  Number                   = {5},
  Pages                    = {1551-1558},
  Volume                   = {61},

  Owner                    = {Ander},
  Timestamp                = {2015.02.17}
}

@Misc{CF2011,
  Title                    = {Cancer's Global Footprint},

  Author                   = {{Global Cancer Map}},
  HowPublished             = {\href{http://globalcancermap.com/}{http://globalcancermap.com/}},
  Year                     = {2011},

  Owner                    = {Ander},
  Timestamp                = {2015.02.12}
}

@InProceedings{Hermans2009,
  Title                    = {Image-based Simulation of Electrical Impedance Techniques Applied on the Human Thorax for Cardio-pulmonary Applications},
  Author                   = {Hermans, F. K. and Heethaar, R. M. and Cotton, R. T. and Harkara, A.},
  Booktitle                = {Proceedings of the COMSOL Conference},
  Year                     = {2009},

  Owner                    = {Ander},
  Timestamp                = {2015.02.17},
  Url                      = {http://www.comsol.com/paper/download/44628/Harkara.pdf}
}

@Book{Harrisons2012,
  Title                    = {Harrison's Principles of Internal Medicine {``Chapter 89''}},
  Author                   = {Horn, L and Pao, W. and Johnson, D.H.},
  Editor                   = {Longo, D.L. and Kasper, D.L. and Jameson, J.L. and Fauci, A.S. and Hauser, S.L. and Loscalzo, J.},
  Publisher                = {McGraw-Hill},
  Year                     = {2012},
  Edition                  = {18},

  Owner                    = {Ander},
  Timestamp                = {2015.02.11}
}

@Misc{Nature2015,
  Author                   = {Nature},
  HowPublished             = {\href{http://www.nature.com/search/executeSearch?pub-date-mode=between\&sp-start-year=2005\&sp-a=sp1001702d\&sp-c=25\&sp-x-1=ujournal\&sp-sfvl-field=subject|ujournal\&shunter=1423674230505\&sp-q=lung%20cancer\&sp-p=all\&sp-s=\&sp-p-1=phrase\&sp-end-year=2015\&genre=research\&sp-advanced=true\&siteCode=default}{www.nature.com/Search: lung cancer}},
  Year                     = {2015},

  Owner                    = {Ander},
  Timestamp                = {2015.02.12}
}

@Article{Otani2010,
  Title                    = {A comparison of the respiratory signals acquired by different respiratory monitoring systems used in respiratory gated radiotherapy},
  Author                   = {Otani, Y. and Fukuda, I. and Tsukamoto, N. and Kumazaki, Y. and Sekine, H. and Imabayashi, E. and Kawaguchi, O. and Nose, T. and Teshima, T. and Dokiya, T.},
  Journal                  = {Med Phys},
  Year                     = {2010},
  Number                   = {12},
  Pages                    = {6178-6186},
  Volume                   = {37},

  Doi                      = {http://dx.doi.org/10.1118/1.3512798},
  Owner                    = {Ander},
  Timestamp                = {2015.02.17},
  Url                      = {http://scitation.aip.org/content/aapm/journal/medphys/37/12/10.1118/1.3512798}
}

@Article{pepin2014,
  Title                    = {Management of respiratory motion in {PET}/computed tomography: the state of the art.},
  Author                   = {P\'epin, A. and Daouk, J. and Bailly, P. and Hapdey, S. and Meyer, M.E.},
  Journal                  = {Nucl Med Commun},
  Year                     = {2014},
  Pages                    = {113-122},
  Volume                   = {35},

  Owner                    = {Ander},
  Timestamp                = {2015.02.16}
}

@Article{Pengpan2011,
  Title                    = {A motion-compensated cone-beam {CT} using electrical impedance tomography imaging},
  Author                   = {Pengpan, T. and Smith, N.D. and Qiu, W. and Yao, A. and Mitchell, C.N. and Soleimani, M.},
  Journal                  = {Physiological Measurement},
  Year                     = {2011},
  Number                   = {1},
  Pages                    = {19},
  Volume                   = {32},

  Abstract                 = {Cone-beam CT (CBCT) is an imaging technique used in conjunction with radiation therapy. For example CBCT is used to verify the position of lung cancer tumours just prior to radiation treatment. The accuracy of the radiation treatment of thoracic and upper abdominal structures is heavily affected by respiratory movement. Such movement typically blurs the CBCT reconstruction and ideally should be removed. Hence motion-compensated CBCT has recently been researched for correcting image artefacts due to breathing motion. This paper presents a new dual-modality approach where CBCT is aided by using electrical impedance tomography (EIT) for motion compensation. EIT can generate images of contrasts in electrical properties. The main advantage of using EIT is its high temporal resolution. In this paper motion information is extracted from EIT images and incorporated directly in the CBCT reconstruction. In this study synthetic moving data are generated using simulated and experimental phantoms. The paper demonstrates that image blur, created as a result of motion, can be reduced through motion compensation with EIT.},
  Owner                    = {Ander},
  Timestamp                = {2015.01.27},
  Url                      = {http://stacks.iop.org/0967-3334/32/i=1/a=002}
}

@Unpublished{Riedel2006,
  Title                    = {Respiratory Motion Estimation: Tests and Comparison of Different Sensors},
  Author                   = {Riedel, M.},
  Note                     = {Interdisciplinary Project},
  Year                     = {2006},

  Owner                    = {Ander},
  Timestamp                = {2015.02.17},
  Url                      = {http://campar.in.tum.de/Students/IdpRespiratoryMotionEstimation}
}

@Conference{Sauerwein2002,
  Title                    = {{3D}-Tomography: Exciting Possibilities Exceeding Conventional {NDT}},
  Author                   = {Sauerwein, C. and Simon, M. and Pfeifer-Sch\''aller, I. and Tomaschko, S. and Klein, F.},
  Booktitle                = {8th {ECNDT}-European Conference on Nondestructive Testing},
  Year                     = {2002},

  Owner                    = {Ander},
  Timestamp                = {2015.02.16}
}

@Misc{Vandemeulebroucke,
  Title                    = {Breathing Thorax Model From {CT} images for use in Radiotherapy},

  Author                   = {Vandemeulebroucke, J. and Kybic, J. and Sarrut, D. and Clarysse, P},
  HowPublished             = {\href{http://cmp.felk.cvut.cz/cmp/demos/Medical/ThoraxModel/}{http://cmp.felk.cvut.cz/ cmp /demos /Medical /ThoraxModel/}},
  Year                     = {2009},

  Owner                    = {Ander},
  Timestamp                = {2015.02.12}
}

@Book{WCR2014,
  Title                    = {World Cancer Report 2014},
  Author                   = {{World Health Organization}},
  Editor                   = {Bernard W. Stewart and Christopher P. Wild},
  Publisher                = {{Lyon, France: International Agency for Research on Cancer}},
  Year                     = {2014},

  ISBN                     = {978-92-832-0429-9},
  Owner                    = {Ander},
  Timestamp                = {2015.02.10}
}

@Article{Zhang2003,
  Title                    = {Application of the spirometer in respiratory gated radiotherapy},
  Author                   = {Zhang ,T. and Keller, H. and O'Brien, M.J. and Mackie, T.R. and Paliwal, B.},
  Journal                  = {Med Phys},
  Year                     = {2003},

  Month                    = {Dec},
  Number                   = {12},
  Pages                    = {3165-3171},
  Volume                   = {30},

  Owner                    = {Ander},
  Timestamp                = {2015.02.17}
}

@Book{4DCT2013,
  Title                    = {{4D} Modeling and Estimation of Respiratory Motion for Radiation Therapy},
  Editor                   = {Ehrhardt, J. and Lorenz, C.},
  Publisher                = {Springer},
  Year                     = {2013},

  Owner                    = {Ander},
  Timestamp                = {2015.02.16}
}

@Misc{Cancerorg,
  Title                    = {{Cancer Treatment and Survivorship Facts and Figures: 2014-2015 }},

  Author                   = {Carol DeSantis and Rebecca Siegel and Ahmedin Jemal},
  HowPublished             = {Available from: \href{https://www.cancer.org/content/dam/cancer-org/research/cancer-facts-and-statistics/cancer-treatment-and-survivorship-facts-and-figures/cancer-treatment-and-survivorship-facts-and-figures-2014-2015.pdf}{https://www.cancer.org/content/dam/cancer-org/research/cancer-facts-and-statistics/cancer-treatment-and-survivorship-facts-and-figures/cancer-treatment-and-survivorship-facts-and-figures-2014-2015.pdf}, accessed on 31/10/2017.},
  Note                     = {Cancer.org},
  Year                     = {2015},

  Owner                    = {Ander},
  Timestamp                = {2015.02.12}
}

@misc{bragg,
   author = "Wikipedia",
   title = "Bragg peak",
   year = "2017",
   url = "https://commons.wikimedia.org/wiki/File:BraggPeak.png",
   note = "[Online; accessed 31-October-2017]"
 }



@article{dosanjhparticle,
  title={From Particle Physics to Medical Applications},
  author={Dosanjh, Manjit}
}

@misc{biguri_ander_2016_159016,
  author       = {Biguri, Ander and
                  Dosanjh, Manjit and
                  Hancock, Steven and
                  Soleimani, Manuchehr},
  title        = {{TIGRE: Tomographic Iterative GPU-based 
                   Reconstruction toolbox}},
  booktitle={TOSCA 2016},
  month        = sep,
  year         = 2016,
  doi          = {10.5281/zenodo.159016},
  url          = {https://doi.org/10.5281/zenodo.159016}
}
@inproceedings{biguri2016motion,
  title={Motion correction in {X}-ray tomography using a priori known deformation vector fields and iterative reconstruction methods},
  author={Biguri, Ander and Hancock, S and Dosanjh, M and Soleimani, Manuchehr},
  booktitle={Enlight Annual Meeting 2016 and Training Event},
  year={2016},
  organization={University of Bath}
}
@inproceedings{biguri2017motion,
  title={Improvement of image quality in {4D-CBCT} respiratory correlated and motion-compensated reconstruction using iterative algorithms and {GPU} acceleration},
  author={Biguri, Ander and Hancock, S and Dosanjh, M and Soleimani, Manuchehr},
  booktitle={BIGART 2017},
  year={2017},
}
@article{biguri2017general,
  title={A General Method for Motion Compensation in {X}-ray Computed Tomography},
  author={Biguri, Ander and Hancock, Steven and Dosanjh, Manjit and Soleimani, Manuchehr},
  journal={Physics in Medicine and Biology},
  volume={62},
  number={16},
  year={2017},
  publisher={IOP}
}
@article{biguri2015tracking,
  title={Tracking boundary movement and exterior shape modelling in lung {EIT} imaging},
  author={Biguri, Ander and Grychtol, Bartlomij and Adler, Andy and Soleimani, Manuchehr},
  journal={Physiological Measurement},
  volume={36},
  number={6},
  pages={1119},
  year={2015},
  publisher={University of Bath}
}

@inproceedings{biguri2015statistical,
  title={Statistical and deterministic approaches for electrode movement in lung {EIT}},
  author={Biguri, Ander and Soleimani, Manuchehr},
  booktitle={EIT2015},
  year={2015},
  organization={University of Bath}
}

@inproceedings{biguri20154d,
  title={{4D FEM} models of the human thorax},
  author={Biguri, Ander and Soleimani, Manuchehr},
  booktitle={EIT2015},
  year={2015},
  organization={University of Bath}
}

@inproceedings{biguri2015electrode,
  title={Electrode movement due to breathing in lung {EIT} imaging},
  author={Biguri, Ander and Soleimani, Manuchehr},
  booktitle={Applied Inverse Problem AIP 2015},
  year={2015},
  organization={University of Bath}
}



@inproceedings{biguri2015dual,
  title={Dual modality {EIT-CBCT} for lung radiation therapy},
  author={Biguri, Ander and Soleimani, Manuchehr},
  booktitle={ENLIGHT 2014},
  year={2015},
  organization={University of Bath}
}

@article{biguri2016gpu,
  title={{GPU} based iterative {CBCT} for prospective motion compensated algorithm for radiation therapy},
  author={Biguri, Ander and Dosanjh, M and Hancock, S and Soleimani, Manuchehr},
  journal={Radiotherapy and Oncology},
  volume={118},
  pages={S11--S12},
  year={2016},
  publisher={Elsevier}
}

@article{floridi2014c,
  title={{C}-arm cone-beam computed tomography in interventional oncology: technical aspects and clinical applications},
  author={Floridi, Chiara and Radaelli, Alessandro and Abi-Jaoudeh, Nadine and Grass, Micheal and De Lin, Ming and Chiaradia, Melanie and Geschwind, Jean-Francois and Kobeiter, Hishman and Squillaci, Ettore and Maleux, Geert and others},
  journal={La radiologia medica},
  volume={119},
  number={7},
  pages={521--532},
  year={2014},
  publisher={Springer}
}
@Article{Acord2017,
author="Acord, Michael
and Shellikeri, Sphoorti
and Vatsky, Seth
and Srinivasan, Abhay
and Krishnamurthy, Ganesh
and Keller, Marc S.
and Cahill, Anne Marie",
title="Reduced-dose C-arm computed tomography applications at a pediatric institution",
journal="Pediatric Radiology",
year="2017",
month="Oct",
day="05",
abstract="Reduced-dose {C}-arm computed tomography (CT) uses flat-panel detectors to acquire real-time 3-D images in the interventional radiology suite to assist with anatomical localization and procedure planning.",
issn="1432-1998",
doi="10.1007/s00247-017-3964-0",
url="https://doi.org/10.1007/s00247-017-3964-0"
}

@article{alamri2012applications,
  title={Applications of {CBCT} in dental practice: a review of the literature.},
  author={Alamri, Hadi Mohammed and Sadrameli, Mitra and Alshalhoob, MA and Alshehri, MA},
  journal={General dentistry},
  volume={60},
  number={5},
  pages={390--400},
  year={2012}
}

@article{nguyen2015potential,
  title={Potential applications of image-guided radiotherapy for radiation dose escalation in patients with early stage high-risk prostate cancer},
  author={Nguyen, Nam P and Davis, Rick and Bose, Satya R and Dutta, Suresh and Vinh-Hung, Vincent and Chi, Alexander and Godinez, Juan and Desai, Anand and Woods, William and Altdorfer, Gabor and others},
  journal={Frontiers in oncology},
  volume={5},
  year={2015},
  publisher={Frontiers Media SA}
}

@article{schmidt2015radiotherapy,
  title={Radiotherapy planning using {MRI}},
  author={Schmidt, Maria A and Payne, Geoffrey S},
  journal={Physics in medicine and biology},
  volume={60},
  number={22},
  pages={R323},
  year={2015},
  publisher={IOP Publishing}
}
@article{soykut2013use,
  title={The use of {PET/CT} in radiotherapy planning: contribution of deformable registration},
  author={Soykut, Ela Delikgoz and Ozsahin, Esat Mahmut and Guney, Yildiz Yukselen and Arslan, Suheyla Aytac and Or, Ozlem Derinalp and Altundag, Muzaffer Bedri and Ugurluer, Gamze and Tsoutsou, Pelagia G},
  journal={Frontiers in oncology},
  volume={3},
  year={2013},
  publisher={Frontiers Media SA}
}
@article{ozenne2017improved,
  title={Improved cardiac magnetic resonance thermometry and dosimetry for monitoring lesion formation during catheter ablation},
  author={Ozenne, Val{\'e}ry and Toupin, Solenn and Bour, Pierre and de Senneville, Baudouin Denis and Lepetit-Coiff{\'e}, Matthieu and Boissenin, Manuel and Benois-Pineau, Jenny and Hansen, Michael S and Inati, Souheil J and Govari, Assaf and others},
  journal={Magnetic resonance in medicine},
  volume={77},
  number={2},
  pages={673--683},
  year={2017},
  publisher={Wiley Online Library}
}
@article{LAGENDIJK200825,
title = "{MRI}/linac integration",
journal = "Radiotherapy and Oncology",
volume = "86",
number = "1",
pages = "25 - 29",
year = "2008",
issn = "0167-8140",
doi = "https://doi.org/10.1016/j.radonc.2007.10.034",
url = "http://www.sciencedirect.com/science/article/pii/S0167814007005476",
author = "Jan J.W. Lagendijk and Bas W. Raaymakers and Alexander J.E. Raaijmakers and Johan Overweg and Kevin J. Brown and Ellen M. Kerkhof and Richard W. van der Put and Björn Hårdemark and Marco van Vulpen and Uulke A. van der Heide",
keywords = "MRI, IGRT, Accelerator, Position verification"
}

@article{ding2007study,
  title={A study on adaptive IMRT treatment planning using kV cone-beam CT},
  author={Ding, George X and Duggan, Dennis M and Coffey, Charles W and Deeley, Matthew and Hallahan, Dennis E and Cmelak, Anthony and Malcolm, Arnold},
  journal={Radiotherapy and Oncology},
  volume={85},
  number={1},
  pages={116--125},
  year={2007},
  publisher={Elsevier}
}
@article{wilson1946radiological,
  title={Radiological use of fast protons},
  author={Wilson, Robert R},
  journal={Radiology},
  volume={47},
  number={5},
  pages={487--491},
  year={1946},
  publisher={The Radiological Society of North America}
}