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replace Slicethick nomenclature with SpatRz. #22

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grandjeanlab opened this issue Aug 16, 2024 · 0 comments
Open

replace Slicethick nomenclature with SpatRz. #22

grandjeanlab opened this issue Aug 16, 2024 · 0 comments

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@grandjeanlab
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Is your feature request related to a problem? Please describe.
depending on how the images are reconstructed, the thickness may be encoded across the y or the z axis. currently aidaqc assumes it is on the z axis.

this is not the case for RAS or LPI encoded niftis.

afni 3dsample states the following
For example OR_CODE = LPI is the standard
'neuroscience' orientation, where the x-axis is
Left-to-Right, the y-axis is Posterior-to-Anterior,
and the z-axis is Inferior-to-Superior.

Describe the solution you'd like
replace slicethick to spatrz in all aidaqc outputs.

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