diff --git a/apps/runner/Pipfile b/apps/runner/Pipfile index 37332c59..ece19497 100644 --- a/apps/runner/Pipfile +++ b/apps/runner/Pipfile @@ -14,6 +14,7 @@ matplotlib = "*" pymongo = "*" pydantic = "==1.10.7" pytest-cov = "*" +pipreqs = "*" [dev-packages] # libmagic dlls for windows hosts https://pypi.org/project/python-magic/ (when missing, vague errors and it crashes) diff --git a/apps/runner/Pipfile.lock b/apps/runner/Pipfile.lock index afca901c..f8fb32dd 100644 --- a/apps/runner/Pipfile.lock +++ b/apps/runner/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "874832a72d12c159cbcae0c0f42706d41076dd93e7d5e2c9bf73c2b25567ff3e" + "sha256": "b036f298ccdeee1247313c019e6adaa1be9c14c2c0496db33b487e30a4291300" }, "pipfile-spec": 6, "requires": { @@ -16,183 +16,252 @@ ] }, "default": { + "asttokens": { + "hashes": [ + "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7", + "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2" + ], + 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"sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31", - "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0" - ], - "markers": "python_version < '3.10'", - "version": "==3.17.0" + "version": "==0.43.0" } } } diff --git a/apps/runner/runner.py b/apps/runner/runner.py index bda4b21c..dac6d8a0 100644 --- a/apps/runner/runner.py +++ b/apps/runner/runner.py @@ -11,6 +11,8 @@ import requests from bson.binary import Binary +from pipreqs import pipreqs + from modules.data.types import DocumentId, IncomingStartRequest from modules.data.experiment import ExperimentData, ExperimentType from modules.data.parameters import Parameter, parseRawHyperparameterData @@ -122,6 +124,30 @@ def run_batch(data: IncomingStartRequest): os.chdir('../..') close_experiment_run(exp_id) return + + # If it is a python file get the pipreqs + if experiment.experimentType == ExperimentType.PYTHON: + try: + os.system(f"pipreqs --savepath userProvidedFileReqs.txt ExperimentFiles/{exp_id}") + except Exception as err: + explogger.error("Failed to generate pip requirements") + explogger.exception(err) + os.chdir('../..') + close_experiment_run(exp_id) + return + + # check if the new requirements exists + if os.path.exists("userProvidedFileReqs.txt"): + # do pip install -r userProvidedFileReqs.txt + try: + os.system(f"pip install -r userProvidedFileReqs.txt") + except Exception as err: + explogger.error("Failed to install pip requirements") + explogger.exception(err) + os.chdir('../..') + close_experiment_run(exp_id) + return + explogger.info(f"Generating configs and downloading to ExperimentFiles/{exp_id}/configFiles") diff --git a/example_experiments/python/addNumsWithNumpy.py b/example_experiments/python/addNumsWithNumpy.py new file mode 100644 index 00000000..a81382c9 --- /dev/null +++ b/example_experiments/python/addNumsWithNumpy.py @@ -0,0 +1,58 @@ +import csv +import sys +import configparser + +# import a random python package to test +import numpy as np + +# pylint: disable-next=pointless-string-statement +""" +This experiment demonstrates outputting additional information to a file +and telling the system to gather the data from that file. + +There are two different ways to gather additional information from an experiment + - Trial's Extra File: Gathers the designated file that a run of the file generates and places in a zip to be uploaded when + the experiment completes + - Trial Result: Integrates the information from a 2 line csv of headers and values that the file run generates + and adds them to the result csv that is being uploaded + +How to tell if they worked + - Trial's Extra File: You can download a zip file that contains the different output files specified + - Trial Result: The result csv downloaded has been expanded with information from the specified file + + +Example settings for a run that demonstrates this: (Any Fields not specified can be left blank or to whatever their default is) + +Info: +Trial Result: AddNumResult.csv +If you want a collection of each CSV this experiment runs: + Trial's Extra File: AddNumResult.csv +Both can be used at the same time + +Parameters: +x, 1, 1, 10, 1 +y, 1, 1, 10, 1 +""" + +# pylint: disable=glados-print-used + +def main(): + config = configparser.ConfigParser() + args = sys.argv[1:] + configFile = args[0] + config.read(configFile) + x = int(config["DEFAULT"]["x"]) + y = int(config["DEFAULT"]["y"]) + # make sure np works + print("NUMPY:", np.array([1, 2, 3, 4, 5])) + with open('AddNumResult.csv', 'w', encoding="utf8") as result: + writer = csv.writer(result) + writer.writerow(['Addition', 'Subtraction']) + writer.writerow([x + y, x - y]) + + print("done") + return 0 + + +if __name__ == "__main__": + main()