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Dicom to Minc conversion failed #49

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eltred00 opened this issue Sep 28, 2017 · 1 comment
Open

Dicom to Minc conversion failed #49

eltred00 opened this issue Sep 28, 2017 · 1 comment

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@eltred00
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Dear author,
we are facing a Dicom to Minc conversion failed using dcm2mnc (we use Loris 17.0 dev).
We triyed with dcm2mnc-centos-6.9_4_GE_v2 and we have the same result.
We didn't get any problems before until we try to upload a new MRI from a new device.
Information from DICOM Header are attached with this post

DICOM_Tags.txt

the failer message :

getting md5sums and gzipping!!

  • Taken from dir : /data/cnbp/bin/mri/ImagingUpload-12-52-kfaeyH
  • Archive target location : /data/cnbp/data/tarchive/DCM_2017-02-01_ImagingUpload-12-52-kfaeyH.tar
  • Name of creating host : 132.219.138.166
  • Name of host OS : Linux
  • Created by user : lorisadmin
  • Archived on : 2017-09-27 12:56:11
  • dicomSummary version : 1
  • dicomTar version : 1
  • md5sum for DICOM tarball : 908319863e5fcec6ea07c1ad90118ed3 ImagingUpload-12-52-kfaeyH.tar
  • md5sum for DICOM tarball gzipped : 74b1da259dfd9def75e5b4908b2ba53e ImagingUpload-12-52-kfaeyH.tar.gz
  • md5sum for complete archive : 4b9d740833209f3338989fa1c518c843 DCM_2017-02-01_ImagingUpload-12-52-kfaeyH.tar

Adding archive info into database

Removing temporary files from target location

Done adding archive info into database

/data/cnbp/bin/mri/uploadNeuroDB/tarchiveLoader -globLocation -profile prod /data/cnbp/data/tarchive/DCM_2017-02-01_ImagingUpload-12-52-kfaeyH.tar -verbose
md5sum /data/cnbp/data/tarchive/DCM_2017-02-01_ImagingUpload-12-52-kfaeyH.tar
PSCID is: MTL0014
CandID id: 650780
visit_label is: T1
candidate id 650780
PSCID is: MTL0014
CandID id: 650780
visit_label is: T1
Spool message is:
Dicom to Minc conversion failed

dicom_to_minc failure, exit code 255 at /data/cnbp/bin/mri/uploadNeuroDB/tarchiveLoader line 370.

I can chair with you a DICOM folder if you want to try by your side.
Redha
from sainte Justine Hospital
Montreal.

@dyt811
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dyt811 commented Oct 24, 2017

Hmm... I think you can close the issue. I realized we posted at the wrong Repo. Going to repost at the https://github.com/BIC-MNI/minc-tools/ instead. Sorry about the confusion. Got confused MINC-toolkit vs MINC-tool and what each repo is for.

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