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phytofit_settings_AZOMP_2021AZMPmeeting.txt
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phytofit_settings_AZOMP_2021AZMPmeeting.txt
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"setting_id"\"value"\"setting_description"\"value_description"\"variable_type"
"region"\"atlantic"\"Region"\"Atlantic"\"2"
"sat_alg"\"modisaquar2022.0_chlpoly4"\"Sensor and variable"\"MODIS-Aqua R2022.0 POLY4 chl-a (regional band ratio)"\"2"
"concentration_type"\"full"\"Full chl-a concentration or subset based on cell size using one of two models"\"Full chlorophyll-a concentration"\"2"
"cell_size_model1"\"small"\"Cell size using model 1"\"Small"\"2"
"cell_size_model2"\"small"\"Cell size using model 2"\"Small"\"2"
"year"\"2023"\"Year"\NA\"1"
"composite"\"1"\"Temporal binning"\"Daily"\"2"
"log_chla"\"TRUE"\"Was the data log10-transformed?"\NA\"3"
"yearday_slide"\"1"\"Day of year (or first day of composite period)"\NA\"1"
"percent"\"20"\"Minimum composite percent coverage"\NA\"1"
"outlier"\"sd3"\"Outlier detection method"\"+/- 3 StDev"\"2"
"dailystat"\"average"\"Composite statistic"\"Arithmetic mean"\"2"
"pixrange1"\""\"Minimum value used in statistics and fit"\NA\"2"
"pixrange2"\""\"Maximum value used in statistics and fit"\NA\"2"
"fitmethod"\"gauss"\"Fit method"\"Shifted Gaussian"\"2"
"bloomShape"\"symmetric"\"Model fit shape"\"Symmetric"\"2"
"smoothMethod"\"loess"\"Smoothing method"\"LOESS"\"2"
"loessSpan"\"0.2"\"LOESS span"\NA\"1"
"t_range"\"85,299"\"Allowed range of days for model fitting"\NA\"1"
"ti_limits"\"85,226"\"Allowed range of days for model initiation"\NA\"1"
"tm_limits"\"108,247"\"Allowed range of days for peak amplitude of model"\NA\"1"
"ti_threshold_type"\"percent_thresh"\"Gaussian t[start] threshold method"\"% amplitude"\"2"
"ti_threshold_percent"\"20"\"Gaussian t[start] percent threshold"\NA\"1"
"ti_threshold_constant"\"0.1"\"Gaussian t[start] constant threshold"\NA\"1"
"tm"\"FALSE"\"Set t[max_fit] as variable parameter in Gaussian"\NA\"3"
"beta"\"TRUE"\"Use beta parameter for linear background in Gaussian"\NA\"3"
"use_weights"\"TRUE"\"Weight fit points by composite percent coverage for Gaussian"\NA\"3"
"rm_bkrnd"\"TRUE"\"Remove background of Gaussian"\NA\"3"
"flag1_lim1"\"0.75"\"Gaussian fit flag 1 lower limit"\NA\"2"
"flag1_lim2"\"1.25"\"Gaussian fit flag 1 upper limit"\NA\"2"
"flag2_lim1"\"0.85"\"Gaussian fit flag 2 lower limit"\NA\"2"
"flag2_lim2"\"1.15"\"Gaussian fit flag 2 upper limit"\NA\"2"
"threshcoef"\"1.05"\"Coefficient for threshold method"\NA\"1"
"fullrunoutput_png"\"TRUE"\"For full run, create png of each fit?"\NA\"3"
"fullrunoutput_statcsv"\"TRUE"\"For full run, create csv of composite stats for each year?"\NA\"3"
"fullrunyears"\"2002,2023"\"For full run, earliest and latest years in the list of years to process"\NA\"1"
"fullrunboxes"\"CLS,GS,LAS"\"For full run, list of boxes to process"\"See user guide for full names and boundaries of polygons"\"2"
"box"\"custom"\"Polygon name"\"See user guide for full names and boundaries of polygons"\"2"
"custom_name"\""\"Custom polygon name"\NA\"2"
"polystr"\"NA"\"Custom polygon string"\"Decimal degrees"\"2"