example_parameters.yaml

---
type: reference
name: Homo_sapiens
genome: </path/to/GCF_000001405.39_genomic.fna>
annotation: </path/to/GCF_000001405.39_genomic.gff>
---
type: core
name: Gorilla_gorilla
genome: </path/to/GCF_008122165.1_genomic.fna>
annotation: </path/to/GCF_008122165.1_genomic.gff>
orthologs: </path/to/oma/PairwiseOrthologs/Homo_sapiens_rep-Gorilla_gorilla_rep.txt>
---
type: core
name: Macaca_mulatta
genome: </path/to/GCF_003339765.1_genomic.fna>
annotation: </path/to/GCF_003339765.1_genomic.gff>
orthologs: </path/to/oma/PairwiseOrthologs/Homo_sapiens_rep-Macaca_mulatta_rep.txt>
---
type: core
name: Nomascus_leucogenys
genome: </path/to/GCF_006542625.1_genomic.fna>
annotation: </path/to/GCF_006542625.1_genomic.gff>
orthologs: </path/to/oma/PairwiseOrthologs/Homo_sapiens_rep-Nomascus_leucogenys_rep.txt>
---
type: core
name: Pongo_abelii
genome: </path/to/GCF_002880775.1_genomic.fna>
annotation: </path/to/GCF_002880775.1_genomic.gff>
orthologs: </path/to/oma/PairwiseOrthologs/Homo_sapiens_rep-Pongo_abelii_rep.txt>