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Enable pulsar batch mode #18

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BenKaehler opened this issue Nov 18, 2022 · 3 comments
Open

Enable pulsar batch mode #18

BenKaehler opened this issue Nov 18, 2022 · 3 comments

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@BenKaehler
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This is a note that I've taken the config file pulsar parameter out of the inputs, because it breaks qiime2 provenance tracking.

Could be added in future, but would need extra work. Perhaps a new config file semantic type would be needed, if it doesn't already exist.

@BenKaehler
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BenKaehler commented Nov 18, 2022

job.res is also too hard. Let me know if you need it.

@BenKaehler
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BenKaehler commented Nov 18, 2022

Actually, I'm not going to add the whole pulsar.select "batch" option unless someone asks for it.

@BenKaehler BenKaehler changed the title Pulsar config file Enable pulsar batch mode Nov 19, 2022
@zdk123
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zdk123 commented Feb 9, 2023

Hi there - the config files shipped with the package are really for illustration. The real magic is happening via batchjobs and there are too many compute cluster configurations to support so it's really up to the user/hpc admin to figure this out.

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