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setup.py
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setup.py
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""" setup.py : Script for TimeCellAnalysis """
__author__ = "HarshaRani"
__copyright__ = "Copyright 2022 TimeCellAnalysis, NCBS"
__maintainer__ = "HarshaRani"
__email__ = "hrani@ncbs.res.in"
import os,sys,subprocess
import setuptools
from setuptools import setup, Extension,command
from setuptools.command.build_ext import build_ext
class git_clone_external(build_ext):
def run(self):
if not os.path.isdir("extern/pybind11"):
subprocess.check_call(['git', 'clone', 'https://github.com/pybind/pybind11/','extern/pybind11/'])
build_ext.run(self)
if sys.version_info >= (3,5):
{
setuptools.setup(
name="TCAnalysis",
description="The code base is to use of timeCell python module on Matlab files",
version="1.0",
author= "Upinder S. Bhalla",
author_email="bhalla@ncbs.res.in",
maintainer= "HarshaRani",
maintainer_email= "hrani@ncbs.res.in",
long_description = open('README.md', encoding='utf-8').read(),
long_description_content_type='text/markdown',
cmdclass = {'build_ext': git_clone_external},
packages=['TimeCellAnalysis','TimeCellAnalysis.TcPy','TimeCellAnalysis.rho-matlab'],
package_dir={'TimeCellAnalysis': "."},
ext_modules=[Extension('tc', ['TcPy/tcDefaults.cpp','TcPy/tiScore.cpp','TcPy/r2bScore.cpp','TcPy/peqScore.cpp','TcPy/tcBind.cpp'], include_dirs=['extern/pybind11/include'])],
install_requires = ['numpy','matplotlib','h5py'],
url ="http://github.com/bhallalab/timecellanalysis",
package_data = {"TimeCellAnalysis" : ['TcPy/*','rho-matlab/*',"README.md"]},
include_package_data=True,
license="GPLv3",
entry_points = {
'console_scripts' : [
'TimeCellAnalysis.ti_demo = TimeCellAnalysis.__main__:run',
'TimeCellAnalysis.ground_truth_check = TimeCellAnalysis.__main__:run_ground_truth',
'TimeCellAnalysis.r2b_demo = TimeCellAnalysis.__main__:run_r2bdemo',
'TimeCellAnalysis.run_batchanalysis = TimeCellAnalysis.__main__:run_batchanalysis'
]
},
)
}
else:
print("Need python >= 3.5")