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DESCRIPTION
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DESCRIPTION
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Package: VCFArray
Title: Representing on-disk / remote VCF files as array-like objects
Version: 1.21.0
Authors@R: c(
person("Qian", "Liu", email = "qliu7@buffalo.edu", role = c("aut", "cre")),
person("Martin", "Morgan", role = "aut"))
Description: VCFArray extends the DelayedArray to represent VCF data entries
as array-like objects with on-disk / remote VCF file as backend. Data
entries from VCF files, including info fields, FORMAT fields, and the
fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray
instances with different dimensions.
biocViews: Infrastructure, DataRepresentation, Sequencing, VariantAnnotation
Depends:
R (>= 3.6),
methods,
BiocGenerics,
DelayedArray (>= 0.7.28)
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Liubuntu/VCFArray
BugReports: https://github.com/Liubuntu/VCFArray/issues
Imports:
tools,
GenomicRanges,
VariantAnnotation (>= 1.29.3),
GenomicFiles (>= 1.17.3),
S4Vectors (>= 0.19.19),
Rsamtools
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Suggests:
SeqArray,
BiocStyle,
BiocManager,
testthat,
knitr,
rmarkdown