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bco-non-classified.owl
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@prefix : <http://purl.obolibrary.org/obo/bco/bco-non-classified.owl#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix terms: <http://purl.org/dc/terms/> .
@prefix protege: <http://protege.stanford.edu/plugins/owl/protege#> .
@prefix oboInOwl: <http://www.geneontology.org/formats/oboInOwl#> .
@prefix ncbitaxon: <http://purl.obolibrary.org/obo/ncbitaxon#> .
@prefix attributes: <http://rs.tdwg.org/dwc/terms/attributes/> .
<http://purl.obolibrary.org/obo/bco/bco-non-classified.owl> a owl:Ontology ;
owl:versionIRI <http://purl.obolibrary.org/obo/bco/2016-12-14/bco-non-classified.owl> ;
owl:imports <http://purl.obolibrary.org/obo/bco/releases/2016-12-14/imports/obi_bco_imports.owl> , <http://purl.obolibrary.org/obo/ro/core.owl> , <http://purl.obolibrary.org/obo/bco/releases/2016-12-14/imports/pco_bco_imports.owl> , <http://purl.obolibrary.org/obo/bco/releases/2016-12-14/imports/bfo_bco_imports.owl> , <http://purl.obolibrary.org/obo/bco/releases/2016-12-14/imports/dwcterms.owl> , <http://purl.obolibrary.org/obo/iao/ontology-metadata.owl> ;
dc:contributor "Robert Guralnick" ;
dc:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
dc:contributor "Biocode Commons Ontology Hackathon members" , "John Wieczorek" , "John Deck" ;
rdfs:label "The Biological Collections Ontology" ;
dc:contributor "Barry Smith" ;
rdfs:comment """This is the editor's version of the ontology. Use with caution. For the live version of the ontology, use http://purl.obolibrary.org/obo/bco.owl.
The Biological Collections Ontology was originally created at the Biocode Commons Hackathon at GSC14. Older versions can be viewed at http://code.google.com/p/biocode-commons/source/browse/#svn%2Ftrunk%2Fontologies%2Fbiocollections. Some of the classes in this ontology may be replaced by existing or newly requested terms from OBI or other ontologies."""^^xsd:string ;
dc:contributor "Ramona Walls" .
#
#
# #################################################################
# #
# # Annotation properties
# #
# #################################################################
#
#
# http://purl.obolibrary.org/obo/BCO_0000057
obo:BCO_0000057 a owl:AnnotationProperty ;
rdfs:label "taxonomic inventory metadata preferred name"@en ;
rdfs:subPropertyOf obo:IAO_0000118 .
#
# http://purl.obolibrary.org/obo/BCO_0000060
obo:BCO_0000060 a owl:AnnotationProperty ;
rdfs:label "BCO preferred label"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000074
obo:BCO_0000074 a owl:AnnotationProperty ;
rdfs:label "dwc_bco mapping"@en .
#
# http://purl.obolibrary.org/obo/IAO_0000231
obo:IAO_0000231 a owl:AnnotationProperty .
#
# http://purl.obolibrary.org/obo/IAO_0000424
obo:IAO_0000424 a owl:AnnotationProperty .
#
# http://purl.obolibrary.org/obo/IAO_0000589
obo:IAO_0000589 a owl:AnnotationProperty .
#
# http://purl.obolibrary.org/obo/IAO_creation_date
obo:IAO_creation_date a owl:AnnotationProperty .
#
# http://purl.obolibrary.org/obo/OBI_0000293
obo:OBI_0000293 a owl:AnnotationProperty .
#
# http://purl.obolibrary.org/obo/RO_0002233
obo:RO_0002233 a owl:AnnotationProperty .
#
# http://purl.org/dc/elements/1.1/creator
dc:creator a owl:AnnotationProperty .
#
# http://purl.org/dc/elements/1.1/source
dc:source a owl:AnnotationProperty .
#
#
#
# #################################################################
# #
# # Object Properties
# #
# #################################################################
#
#
# http://purl.obolibrary.org/obo/BCO_0000058
obo:BCO_0000058 a owl:ObjectProperty ;
obo:IAO_0000115 "The relationship between an independent continuant and a role. Slightly more specific than the parent class bearer of." ;
rdfs:comment "This property was originally created in OBI, but in OBI it was deprecated and replaced by BFO:0000087. However, the BFO relation was replaced by has role at some time, which is not yet part of a stable release. Once the BFO role has been tested and released, it may replace this relation." ;
rdfs:label "has role"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000067
obo:BCO_0000067 a owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
a owl:TransitiveProperty ;
obo:IAO_0000231 obo:IAO_0000423 ;
rdfs:label "derives from by planned process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/BCO_0000068
obo:BCO_0000068 a owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
a owl:TransitiveProperty ;
obo:IAO_0000116 "This property used an old version of the has input relation, so it has been deprecated."^^rdfs:Literal ;
obo:IAO_0000231 obo:IAO_0000423 ;
rdfs:label "is derived into by planned process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/BCO_0000085
obo:BCO_0000085 a owl:ObjectProperty ;
rdfs:subPropertyOf obo:IAO_0000136 ;
rdfs:domain obo:BCO_0000084 ;
rdfs:range <http://rs.tdwg.org/dwc/terms/Taxon> ;
rdfs:comment "This relation is used specifically to link a taxonomic association to a taxon and is used with the of organism relation." ;
rdfs:label "to taxon"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000086
obo:BCO_0000086 a owl:ObjectProperty ;
rdfs:subPropertyOf obo:IAO_0000136 ;
rdfs:domain obo:BCO_0000084 ;
rdfs:range obo:PCO_0000031 ;
rdfs:comment "This relation specifically links an identification association to an organismal entity and is used together with the to taxon relation." ;
rdfs:label "of organism"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000087
obo:BCO_0000087 a owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000050 ;
owl:propertyChainAxiom _:genid2 .
_:genid2 a rdf:List ;
rdf:first _:genid3 .
_:genid3 owl:inverseOf obo:BCO_0000086 .
_:genid2 rdf:rest _:genid1 .
_:genid1 a rdf:List ;
rdf:first obo:BCO_0000085 ;
rdf:rest rdf:nil .
obo:BCO_0000087 rdfs:comment "A shortcut relation to an organsimal entity to a taxon or taxa." ;
rdfs:label "member of taxon"@en .
#
# http://purl.obolibrary.org/obo/BFO_0000051
obo:BFO_0000051 a owl:ObjectProperty .
#
# http://purl.obolibrary.org/obo/BFO_0000066
obo:BFO_0000066 a owl:ObjectProperty .
#
# http://purl.obolibrary.org/obo/OBI_0000295
obo:OBI_0000295 a owl:ObjectProperty ;
rdfs:label "is_specified_input_of" .
#
# http://purl.obolibrary.org/obo/OBI_0000299
obo:OBI_0000299 a owl:ObjectProperty .
#
# http://purl.obolibrary.org/obo/OBI_0000312
obo:OBI_0000312 a owl:ObjectProperty .
#
# http://purl.obolibrary.org/obo/RO_0000053
obo:RO_0000053 a owl:ObjectProperty .
#
# http://purl.obolibrary.org/obo/RO_0000058
obo:RO_0000058 a owl:ObjectProperty .
#
# http://purl.obolibrary.org/obo/RO_0000059
obo:RO_0000059 a owl:ObjectProperty .
#
#
#
# #################################################################
# #
# # Classes
# #
# #################################################################
#
#
# http://purl.obolibrary.org/obo/BCO_0000003
obo:BCO_0000003 a owl:Class ;
rdfs:subClassOf obo:OBI_0000011 , _:genid4 .
_:genid4 a owl:Restriction ;
owl:onProperty obo:OBI_0000293 ;
owl:someValuesFrom obo:BFO_0000040 .
obo:BCO_0000003 rdfs:subClassOf _:genid5 .
_:genid5 a owl:Restriction ;
owl:onProperty obo:OBI_0000299 ;
owl:someValuesFrom obo:IAO_0000030 .
obo:BCO_0000003 obo:BCO_0000057 "sighting"@en ;
obo:IAO_0000112 "A trip camera capture of an image of a jaguar is an observation, because it is \"selected\" by the camera as worthy of obsevation simply by virtue of moving in front of the camera." , "Observing and recording the presence or absence of butterflies during a transect walk." , "Seeing three pelicans flying overhead on Christmas day and report them as part of the Christmas Bird Count." ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "A process in which a person or machine sees or detects a material entity and selects it as worthy of observation, and which has as output an information content entity about the selected material entity." ;
obo:IAO_0000116 "This class replaces class bco_0000003, which was made obsolete because of identifier format." , "We are having conversation with OBI developers about how this term relates to OBI:assay (). Is it equivalent, broader, narrower? What does it mean to be the input to an observation." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "An observing process is distinguished from a specimen collecting process in by having an information content entity as an output rather than a specimen. The information artifact may be written or recorded or just be stored in someone's head (specifically depenedent upon that person). In the context of a taxonomic inventory, an observing process may be called a sighting, which is an ad hoc reporting of, typically, a single taxon occurrence, usually motivated by rarity, individual interest in the taxon, or atypicality of circumstances."@en ;
rdfs:label "observing process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000016
obo:BCO_0000016 a owl:Class ;
rdfs:subClassOf obo:OBI_0000011 , _:genid6 .
_:genid6 a owl:Restriction ;
owl:onProperty obo:OBI_0000299 ;
owl:someValuesFrom obo:BFO_0000040 .
obo:BCO_0000016 obo:IAO_0000112 "a curator submitting a herbarium speciman to a museum"@en , "a researcher submitting a water sample to a laboratory storage collection"@en ;
obo:IAO_0000114 obo:IAO_0000428 ;
obo:IAO_0000115 "A planned process whereby a person submits a material sample to an organization." ;
obo:IAO_0000116 "false"^^xsd:boolean ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "submitting process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000025
obo:BCO_0000025 a owl:Class ;
rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000114 obo:IAO_0000428 ;
obo:IAO_0000115 "An information artifact that is about a spatio-temporal region at which a process (such as collecting process, observing process, or material sampling process) occured."@en ;
obo:IAO_0000116 "This term replaces the obsolete class bco_0000025, but with the correct identifier format." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "Darwin Core needs to describe both the site and time where some activity occurred as an information content entity (e.g., in recording data from a lab notebook),therefore, we made locality description about a spatial temporal region, rather than a site."@en ;
rdfs:label "locality description"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000031
obo:BCO_0000031 a owl:Class ;
rdfs:subClassOf obo:BFO_0000027 , _:genid7 .
_:genid7 a owl:Restriction ;
owl:onProperty obo:BFO_0000051 ;
owl:someValuesFrom obo:OBI_0100051 .
obo:BCO_0000031 obo:IAO_0000112 "The herbarium collection at the New York Botanical Garden." , "the painting collection at the Louvre Museum"@en ;
obo:IAO_0000114 obo:IAO_0000428 ;
obo:IAO_0000115 "An object aggregate that has as member part a material sample that is located in museum as a result of a process of curation."@en ;
obo:IAO_0000116 "This term replaced bco_0000031, which was made obsolete because of incorrect identifier format." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "Intent is to document biodiversity for research and education. The class museum collection has meaning that is much broader than biological collections. It would probably be better to import this term from another, more general ontology and create a specific subclass for natural history museum collection."@en ;
rdfs:label "museum collection"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000032
obo:BCO_0000032 a owl:Class ;
rdfs:subClassOf obo:BCO_0000031 ;
obo:IAO_0000112 "the insect collection at the Smithsonian Institution"@en ;
obo:IAO_0000114 obo:IAO_0000428 ;
obo:IAO_0000115 "A museum collection that has as member part a material sample that was derived from an organism."@en ;
obo:IAO_0000116 "This term replaced bco_0000032, which was made obsolete because of incorrect identifier format." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "organismal museum collection"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000042
obo:BCO_0000042 a owl:Class ;
owl:equivalentClass <http://rs.tdwg.org/dwc/terms/Identification> ;
rdfs:subClassOf obo:OBI_0000011 ;
obo:IAO_0000112 "Associating a museum specimen with a specific taxonomic concept based on its characters." , "Using BLAST to identify the taxa present in an environmental (metagenomic) sample." , "Using DNA barcoding to identify a plant species." , "Using a key to identify a plant in the field." ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "A planned process by which an organismal entity is associated with a taxon or taxa." ;
obo:IAO_0000116 "Need to add a relation for has specified output some taxonomic association." , "This term replaces bco_0000042, which was made obsolete because of incorrect identifier format." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "taxonomic identification process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000044
obo:BCO_0000044 a owl:Class ;
owl:equivalentClass _:genid8 .
_:genid8 owl:intersectionOf _:genid11 .
_:genid11 a rdf:List ;
rdf:first obo:BFO_0000040 ;
rdf:rest _:genid9 .
_:genid9 a rdf:List ;
rdf:first _:genid10 .
_:genid10 a owl:Restriction ;
owl:onProperty obo:BCO_0000058 ;
owl:someValuesFrom obo:BCO_0000046 .
_:genid9 rdf:rest rdf:nil .
_:genid8 a owl:Class .
obo:BCO_0000044 obo:IAO_0000112 "A bird observed during a Christmas Bird Count"@en , "A bird observed during a transect walk." , "A tree is forest plot that is measured for diameter at breast height (DBH)." , "An lizard observed in the field that is not collected but whose location is recorded in a field notebook. " ;
obo:IAO_0000114 obo:IAO_0000428 ;
obo:IAO_0000115 "A material entity that has a target of observation role, that is, a material entity that is the input of some observing process."@en ;
obo:IAO_0000116 "This term replaces bco_0000044, which was made obsolete because of incorrect identifier format." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "material target of observation"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000046
obo:BCO_0000046 a owl:Class ;
owl:equivalentClass _:genid12 .
_:genid12 owl:intersectionOf _:genid15 .
_:genid15 a rdf:List ;
rdf:first obo:BFO_0000023 ;
rdf:rest _:genid13 .
_:genid13 a rdf:List ;
rdf:first _:genid14 .
_:genid14 a owl:Restriction ;
owl:onProperty obo:BFO_0000054 ;
owl:someValuesFrom obo:BCO_0000003 .
_:genid13 rdf:rest rdf:nil .
_:genid12 a owl:Class .
obo:BCO_0000046 rdfs:subClassOf obo:BFO_0000023 ;
obo:IAO_0000112 "the role borne by a bird during a Christmas Bird Count"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "A role that is borne by some material entity and is realized by the material entity being the input of an observing process." ;
obo:IAO_0000116 "This term replaced bco_0000046, which was made obsolete because of incorrect identifier format." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "material target of observation role"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000047
obo:BCO_0000047 a owl:Class ;
owl:equivalentClass _:genid16 .
_:genid16 owl:intersectionOf _:genid19 .
_:genid19 a rdf:List ;
rdf:first obo:OBI_0000011 ;
rdf:rest _:genid17 .
_:genid17 a rdf:List ;
rdf:first _:genid18 .
_:genid18 a owl:Restriction ;
owl:onProperty obo:OBI_0000299 ;
owl:someValuesFrom obo:BCO_0000048 .
_:genid17 rdf:rest rdf:nil .
_:genid16 a owl:Class .
obo:BCO_0000047 rdfs:subClassOf obo:OBI_0000011 ;
obo:BCO_0000057 "inventory type"@en ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A planned process by which a taxonomic inventory is created."@en ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0" ;
rdfs:comment "not sure if this should be a type of assay or a type of planned process" ;
rdfs:label "taxonomic inventory process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000048
obo:BCO_0000048 a owl:Class ;
owl:equivalentClass _:genid20 .
_:genid20 owl:intersectionOf _:genid23 .
_:genid23 a rdf:List ;
rdf:first obo:IAO_0000030 ;
rdf:rest _:genid21 .
_:genid21 a rdf:List ;
rdf:first _:genid22 .
_:genid22 a owl:Restriction ;
owl:onProperty obo:OBI_0000312 ;
owl:someValuesFrom obo:BCO_0000047 .
_:genid21 rdf:rest rdf:nil .
_:genid20 a owl:Class .
obo:BCO_0000048 rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000112 "\"The Flora of North America\"" , "The butterflies of Great Britain" , "The plants of Yosemite National Park" ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "A list of names ascribed to biological entities of specified organismal scope recorded over some defined spatial and temporal scope following a described sampling protocol and sampling effort, potentially including values indicating abundance or biomass of the biological entities"@en ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
rdfs:comment "The biological entities are almost always species and the organismal scope typically a taxon but potentially also an ecologically or functionally defined grouping (e.g. ‘water birds’ or ‘trees’) or other operational unit (e.g. genes). The list would typically contain multiple entities, but may be as short as a single entity or, if a sampling effort focused on a certain taxon yielded no results, even contain none." ;
rdfs:label "taxonomic inventory"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000051
obo:BCO_0000051 a owl:Class ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:BCO_0000057 "restricted search"@en ;
obo:IAO_0000112 "Pollard transect-- \"walk a 1km transect at a slow&steady pace, and report on all TOI within 5m in front, and 2.5m on either side of you.\"" ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A taxonomic inventory process that is restricted to defined plots, transects, or points, in which a person or group of people is comprehensively covering the entire defined area, usually with a defined survey time or pace. The search is restricted to a well-defined and human-scale geospatial area (traversable within a time course of less than a day) within which there is an expectation of a comprehensive accounting of the taxonomic items of interest. " ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
rdfs:label "restricted search taxonomic inventory process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000052
obo:BCO_0000052 a owl:Class ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:BCO_0000057 "open search"@en ;
obo:IAO_0000112 "Individual Christmas Bird Count by some team. Organized field trip to a State Park." ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A taxonomic inventory process in which the search is restricted within a larger defined geographic area, but where effort isn't even or complete across the defined region. That is, a planned search restricted to a larger, defined geographic area, but effort isn't evenly distributed throughout the area, nor expected to be a complete and comprehensive accounting of taxa of interest across the defined region. Temporal duration is typically longer than restricted search, lasting hours to all day." ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
rdfs:label "open search taxonomic inventory process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000053
obo:BCO_0000053 a owl:Class ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:BCO_0000057 "opportunistic search"@en ;
obo:IAO_0000112 "Many E-Bird lists are of this nature; useful supplementary information is that observers should state whether they documented every taxon of interest they saw." ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A taxonomic inventory process that is a more casual reporting of occurrences of taxa of interest, often intended to be comprehensive accounting of the taxa of interest, but with no planned trajectory for discovery, nor pre-specified investment of effort. " ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
rdfs:comment "This is more typically used to report multiple sightings, where the motivation is to record presence and abundance, rather than for individual anecdotal occurrences that are noteworthy."@en ;
rdfs:label "opportunistic search taxonomic inventory process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000054
obo:BCO_0000054 a owl:Class ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:BCO_0000057 "trap/sample inventory"@en ;
obo:IAO_0000112 "an inventory of insects in a area using pheremone traps"@en , "an inventory of the large mammals of a park based on camera traps"@en , "inventories based on trawl samples"@en ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A taxonomic inventory process that is typically highly restricted in geospatial extent that involves either the physical extraction of some evidence of the presence of the taxa of interest, such as scat, fur, other material samples or information artifacts such as photographs or sound recordings."@en ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
rdfs:comment "Can be highly targeted and or baited (pheromone trap), or general (pitfall). Trap events can either be \"triggered\" but of long-term deployment, or rigorously temporally specified (left out overnight). "@en ;
rdfs:label "trap or sample taxonomic inventory process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000055
obo:BCO_0000055 a owl:Class ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:BCO_0000057 "adventitious inventory"@en ;
obo:IAO_0000112 "data from ecological studies in which presence of some taxa is recorded to clarify population or community parameters" ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A taxonomic inventory process in which taxon occurrences are recorded as a co-variates of another study, or by happenstance, and later compiled as a taxonomic inventory." ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
rdfs:label "adventitious taxonomic inventory process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000056
obo:BCO_0000056 a owl:Class ;
rdfs:subClassOf obo:BCO_0000047 ;
obo:BCO_0000057 "compilation inventory"@en ;
obo:IAO_0000112 "Atlases and Checklists" ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A taxonomic inventory process in which a list of taxa of interest is assembled from various combinations of existing taxonomic inventories, rather than generated de novo from observations or samples."@en ;
dc:creator "Taxonomic Inventory Metadata Workshop" ;
dc:source "https://docs.google.com/spreadsheet/ccc?key=0AhrY0qRdO4budC1mSUNWTDlkOXBVMjcza2Y3aV84SkE#gid=0"@en ;
rdfs:comment "A compiliation taxonomic inventory process is typically required to document the occurences of taxa of interest over large geospatial areas, or to derive the most comprehensive accounting of presence and absence of taxa of interest in a larger region."@en ;
rdfs:label "compilation taxonomic inventory process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000059
obo:BCO_0000059 a owl:Class ;
rdfs:subClassOf obo:OBI_0000245 , _:genid24 .
_:genid24 a owl:Restriction ;
owl:onProperty obo:BFO_0000051 ;
owl:someValuesFrom obo:BCO_0000031 .
obo:BCO_0000059 obo:IAO_0000112 "The Louvre Museum"@en , "The Smithsonian Institution"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "An institution that cares for (conserves) a collection of artifacts and other objects of scientific, artistic, cultural, or historical importance." ;
obo:IAO_0000119 "ISBN:9780759105096" ;
rdfs:comment "A museum may make its collections available for public viewing through exhibits that may be permanent or temporary. The class museum has meaning that is much broader than biological collecitons. It may be better to import this term from another, more general ontology and create a specific subclass for natural history museum."@en ;
rdfs:label "museum"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000061
obo:BCO_0000061 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "a fossil housed in a natural history museum"@en ;
obo:IAO_0000115 "A specimen that is derived from a fossil."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:label "fossil specimen"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/BCO_0000062
obo:BCO_0000062 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "a bacterial culture in a culture collection"@en , "a tree in an arboretum"@en , "an animal in a zoo"@en , "germplasm"@en ;
obo:IAO_0000115 "A specimen that is alive."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:label "living specimen"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/BCO_0000063
obo:BCO_0000063 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000115 "A specimen that has been preserved."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:label "preserved specimen"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/BCO_0000064
obo:BCO_0000064 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:label "darwin core class"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/BCO_0000065
obo:BCO_0000065 a owl:Class ;
rdfs:subClassOf obo:BCO_0000003 ;
obo:IAO_0000112 "a biologist recording an observation of an animal in a field notebook"@en , "an entomologist recording the presense of butterflies while walking a transect"@en ;
obo:IAO_0000114 obo:IAO_0000123 ;
obo:IAO_0000115 "An observing process in which the observing entity consists of one or more humans."@en ;
rdfs:comment "May be able to use the has agent = has active participant relationship for defining this. May want to work with OBI to define this term in a more general sense for investigations."@en ;
rdfs:label "human observation process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000066
obo:BCO_0000066 a owl:Class ;
rdfs:subClassOf obo:BCO_0000003 ;
obo:IAO_0000112 "a camera trap recording the presence of a jaguar"@en , "a sensor periodically recording the surface temperature of a leaf over several hours"@en ;
obo:IAO_0000114 obo:IAO_0000123 ;
obo:IAO_0000115 "An observing process in which the observing entity consists of one or more machines."@en ;
rdfs:comment "May want to work with OBI to define this term in a more general sense for investigations."@en ;
rdfs:label "machine observation process"@en .
#
# http://purl.obolibrary.org/obo/BCO_0000084
obo:BCO_0000084 a owl:Class ;
rdfs:subClassOf obo:IAO_0000027 , _:genid25 .
_:genid25 a owl:Restriction ;
owl:onProperty obo:BCO_0000085 ;
owl:someValuesFrom <http://rs.tdwg.org/dwc/terms/Taxon> .
obo:BCO_0000084 rdfs:subClassOf _:genid26 .
_:genid26 a owl:Restriction ;
owl:onProperty obo:BCO_0000086 ;
owl:someValuesFrom obo:PCO_0000031 .
obo:BCO_0000084 obo:IAO_0000115 "A data item that is the output of a taxonomic identification process and associates some organismal entity with a taxon or taxa." ;
obo:IAO_0000119 "PPO hackathon Sep. 2016." ;
rdfs:label "identification assertion"@en .
#
# http://purl.obolibrary.org/obo/BFO_0000015
obo:BFO_0000015 a owl:Class ;
owl:equivalentClass <http://rs.tdwg.org/dwc/terms/Event> .
#
# http://purl.obolibrary.org/obo/BFO_0000027
obo:BFO_0000027 a owl:Class ;
rdfs:subClassOf obo:BFO_0000040 ;
rdfs:label "object aggregate"@en .
#
# http://purl.obolibrary.org/obo/BFO_0000029
obo:BFO_0000029 a owl:Class ;
owl:equivalentClass <http://rs.tdwg.org/dwc/dwctype/Location> .
#
# http://purl.obolibrary.org/obo/BFO_0000030
obo:BFO_0000030 a owl:Class ;
rdfs:subClassOf obo:BFO_0000040 ;
rdfs:label "object"@en .
#
# http://purl.obolibrary.org/obo/CARO_0001010
obo:CARO_0001010 a owl:Class ;
rdfs:subClassOf obo:BFO_0000040 ;
obo:IAO_0000115 "Material anatomical entity that is a member of an individual species or is a viral or viroid particle."^^xsd:string ;
obo:IAO_0000117 "Melissa Haendel"^^xsd:string ;
obo:IAO_0000412 "Common Anatomy Reference Onotology - CARO2"@en ;
obo:IAO_0000589 "organism or virus"@en ;
obo:IAO_creation_date "9/18/11"^^xsd:string ;
rdfs:label "organism or virus or viroid"^^xsd:string .
#
# http://purl.obolibrary.org/obo/IAO_0000015
obo:IAO_0000015 a owl:Class .
#
# http://purl.obolibrary.org/obo/IAO_0000178
obo:IAO_0000178 a owl:Class .
#
# http://purl.obolibrary.org/obo/OBI_0000011
obo:OBI_0000011 a owl:Class ;
owl:equivalentClass _:genid27 .
_:genid27 a owl:Restriction ;
owl:onProperty obo:BFO_0000055 ;
owl:someValuesFrom _:genid28 .
_:genid28 a owl:Restriction ;
owl:onProperty obo:RO_0000059 ;
owl:someValuesFrom obo:IAO_0000104 .
obo:OBI_0000011 rdfs:subClassOf obo:BFO_0000015 .
#
# http://purl.obolibrary.org/obo/OBI_0000245
obo:OBI_0000245 a owl:Class .
#
# http://purl.obolibrary.org/obo/OBI_0000659
obo:OBI_0000659 a owl:Class ;
obo:BCO_0000060 "specimen collection process" .
#
# http://purl.obolibrary.org/obo/OBI_0100051
obo:OBI_0100051 owl:equivalentClass <http://rs.tdwg.org/dwc/terms/MaterialSample> ;
obo:IAO_0000112 "A herbarium or museum specimen."^^xsd:string , "A jar of water, the microbes that were filtered from that water, the DNA extracted from those microbes, a subsample of that DNA."^^xsd:string .
#
# http://purl.obolibrary.org/obo/PCO_0000000
obo:PCO_0000000 a owl:Class .
#
# http://purl.obolibrary.org/obo/PCO_0000031
obo:PCO_0000031 a owl:Class .
#
# http://purl.obolibrary.org/obo/bco_0000000
obo:bco_0000000 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "A museum specimen that serves as evidence for a taxonomic identification process bears an evidence role." ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A role that is borne by some entity as a result of the entity providing evidence to support an assertion." ;
obo:IAO_0000231 obo:IAO_0000423 ;
rdfs:comment "Will be replaced by an external ontology class." ;
rdfs:label "evidence role"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000001
obo:bco_0000001 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000115 "An evidence role that persists through time." ;
rdfs:comment """Could add relation that persistant evidence role is specifically dependent on a museum material samples.
Deprecated because we do not need this term. Can use OBI:evidence role. Not clear what it means for an evidence role to persist through time."""@en ;
rdfs:label "persistent evidence role"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000002
obo:bco_0000002 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000227 ;
rdfs:comment "This term is now redundant and is merged with material sampling process http://purl.obolibrary.org/obo/bco_0000022." ;
rdfs:label "collecting process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000003
obo:bco_0000003 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:BCO_0000057 "sighting"@en ;
obo:IAO_0000112 "A trip camera capture of an image of a jaguar is an observation, because it is \"selected\" by the camera as worthy of obsevation simply by virtue of moving in front of the camera." , "Observing and recording the presence or absence of butterflies during a transect walk." , "Seeing three pelicans flying overhead on Christmas day and report them as part of the Christmas Bird Count." ;
obo:IAO_0000115 "A process in which a person or machine sees or detects a material entity and selects it as worthy of observation, and which has as output an information content entity about the selected material entity." ;
obo:IAO_0000116 "This class was made obsolete because of the incorrect identifier format. It has been replaced by BCO_0000003." ;
obo:IAO_0000231 <http://purl.obolibrary.org/obo/bco.owl/BCO_0000075> ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "The information artifact may written or recorded or just be stored in someone's head (specifically depenedent upon that person). In the context of a taxonomic inventory, an observing process may be called a sighting, and is an ad hoc reporting of, typically, a single taxon occurrence, usually motivated by rarity, individual interest in the taxon, or atypicality of circumstances."@en ;
rdfs:label "obsolete observing process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000004
obo:bco_0000004 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000115 "A process of existing in a particular spatio-temporal region."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "This term was originally developed at the Semantics of Biodiversity workshop in 5/2012. It is no longer needed for the BCO." ;
rdfs:label "being there process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000005
obo:bco_0000005 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "a book"@en , "a field notebook"@en ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000231 obo:IAO_0000423 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "IAO has the term document, which is defined as \"A collection of information content entities intended to be understood together as a whole\" and has as examples journal article, patent application, laboratory notebook, and book. IAO also has a term for report, but it is not defined. With this term, we want to describe the physical object that corresponds to some information content entity, together with the information content contained in the document or report. This class may be less important for modeling collection data, but could be important for efforts to get hand written (specifically dependent) reports into an electronic (generically dependent) report, and monitoring that process." ;
rdfs:label "printed report"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000006
obo:bco_0000006 a owl:Class ;
rdfs:subClassOf obo:bco_0000005 ;
obo:IAO_0000112 "A field notebook." ;
obo:IAO_0000114 obo:IAO_0000124 ;
obo:IAO_0000115 "A printed report that records the outcome of some observing process."@en ;
obo:IAO_0000231 <http://purl.obolibrary.org/obo/bco.owl/BCO_0000075> ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "printed observational report"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000007
obo:bco_0000007 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "Filtering sea water to extract only organisms smaller than a certain size."@en , "deciding which branch to collect for a herbarium specimen"@en ;
obo:IAO_0000115 "A process by which a person or machine decides that a particular material entity as worthy of collection or observation." ;
obo:IAO_0000231 obo:IAO_0000423 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "The criteria for selection may be specified in a protocol or may be ad hoc. Should be replaced by OBI:selection, but first OBI needs to fix the definition."@en ;
rdfs:label "selecting process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000016
obo:bco_0000016 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "a curator submitting a herbarium speciman to a museum"@en , "a researcher submitting a water sample to a laboratory storage collection"@en ;
obo:IAO_0000115 "A planned process whereby a person submits a material sample to an organization." ;
obo:IAO_0000116 "This term was made obsolete because it had the incorrect identifier format. It has been replaced by BCO_0000016." ;
obo:IAO_0000231 <http://purl.obolibrary.org/obo/bco.owl/BCO_0000075> ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "obsolete submitting process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000021
obo:bco_0000021 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "picking leaves from a plant" , "removing a fish from the ocean with a net" , "removing dna from cells" ;
obo:IAO_0000115 "A process that involves removing a material entity from its original site to another site." ;
obo:IAO_0000231 obo:IAO_0000423 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "Considered acquisition in OBI, but that is about taking possession. Physical extraction may involve taking pocession, but it may also just involve extraction of something that is already posessed (e.g. of dna from cells). " ;
rdfs:label "physical extraction process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000022
obo:bco_0000022 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "collecting plant parts for herbarium specimens"@en , "collecting sea water samples as part of Ocean Sampling Day"@en ;
obo:IAO_0000115 "A planned process that includes selecting a material entity for study, physically extracting the material entity, and submitting the material entity to some institution for preservation or study."@en ;
obo:IAO_0000118 "collecting event"@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "This term has been replaced by OBI:specimen collection."^^xsd:string ;
rdfs:label "material sampling process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000023
obo:bco_0000023 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
rdfs:label "data sampling process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000024
obo:bco_0000024 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
rdfs:label "statistical sampling process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000025
obo:bco_0000025 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000115 "An information artifact that is about a spatio-temporal region at which a process (such as collecting process, observing process, or material sampling process) occured."@en ;
obo:IAO_0000116 "This term was deprecated because it has the wrong ID format. It is replaced by BCO_0000025." ;
obo:IAO_0000231 <http://purl.obolibrary.org/obo/bco.owl/BCO_0000075> ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "Darwin Core needs to describe both the site and time where some activity occurred as an information content entity (e.g., in recording data from a lab notebook),therefore, we made locality description about a spatial temporal region, rather than a site."@en ;
rdfs:label "obsolete locality description"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000026
obo:bco_0000026 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "the role borne by a branch when it becomes a herbarium specimen" ;
obo:IAO_0000115 "A role that is borne by some material entity and is realized by the material entity being the output of a material sampling process."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "This term has been replaced by OBI:specimen role."^^xsd:string ;
rdfs:label "material sample role"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000027
obo:bco_0000027 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000115 "A sampling process that has as output some material sample."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "Do not need this class. By virtue of the existance of the material sample, we know that the sampling process was successful."@en ;
rdfs:label "successful material sampling process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000028
obo:bco_0000028 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000115 "A material sampling process that has as output exactly zero material samples."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "Do not need this class. By virtue of the absence of the material sample, we know that the sampling process was unsuccessful." ;
rdfs:label "unsuccessful material sampling process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000029
obo:bco_0000029 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "At the GSC14 hackathon in 09/2012, we decided to deprecate this term." ;
rdfs:label "museum collection entity"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000030
obo:bco_0000030 a owl:Class ;
rdfs:subClassOf obo:bco_0000029 ;
obo:IAO_0000115 "A museum collections entity that derives from an organismal entity, has a persistent evidence role and 'depends on' a process of collecting."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment """The label for this on the original diagram was 'collection object'. However, not all entities in collections will fit the defition of 'object', so 'collection entity is probably a better name.
The relation 'depends on' cannot really be used here. Old BFO has 'inverse depends on', but this is not in the current BFO. See dwc_bfo2_new.owl for the original logical definition.
At the GSC14 hackathon in 09/2012, we decided to deprecate this term."""@en ;
rdfs:label "organismal museum collection entity"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000031
obo:bco_0000031 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "The herbarium collection at the New York Botanical Garden." , "the painting collection at the Louvre Museum"@en ;
obo:IAO_0000114 obo:IAO_0000428 ;
obo:IAO_0000115 "An object aggregate that has as member part a material sample that is located in museum as a result of a process of curation."@en ;
obo:IAO_0000116 "This term was made obsolete because of incorrect identifier format. It has been replaced by BCO_0000031." ;
obo:IAO_0000231 <http://purl.obolibrary.org/obo/bco.owl/BCO_0000075> ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "Intent is to document biodiversity for research and education. The class museum collection has meaning that is much broader than biological collections. It would probably be better to import this term from another, more general ontology and create a specific subclass for natural history museum collection."@en ;
rdfs:label "obsolete museum collection"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000032
obo:bco_0000032 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "the insect collection at the Smithsonian Institution"@en ;
obo:IAO_0000114 obo:IAO_0000428 ;
obo:IAO_0000115 "A museum collection that has as member part a material sample that was derived from an organism."@en ;
obo:IAO_0000116 "This term was made obsolete because of incorrect identifier format. It is replaced by BCO_0000031." ;
obo:IAO_0000231 <http://purl.obolibrary.org/obo/bco.owl/BCO_0000075> ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "obsolete organismal museum collection"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000033
obo:bco_0000033 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000423 ;
rdfs:comment "Replaced by OBI organization. Request institution as synonym in OBI." ;
rdfs:label "institution"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000034
obo:bco_0000034 a owl:Class ;
rdfs:subClassOf obo:bco_0000042 ;
obo:IAO_0000115 "A material entity that derives from an organism or virus or viroid."@en ;
rdfs:comment """This class is understood to mean: A material entity that is either an organism, a part of an organism, a collection of organisms, or a fossil.
The relation 'organismal entity derives from organism' was in the original diagram. Subclasses of organismal entity include organism, and It is not clear if it is valid to that an organism derives from an organism (is the derives from relation reflexive?).
At the GSC14 hackathon in 09/2012, we decided to deprecate this term."""@en ;
rdfs:label "obsolete organismal entity"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000035
obo:bco_0000035 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000423 ;
rdfs:comment """This terms was replaced by a term imported from CARO.
The original diagram only had organsim, but DWC and GOs both need to include viruses and viroids."""@en ;
rdfs:label "obsolete organism or virus or viroid"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000036
obo:bco_0000036 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "A herbarium or museum specimen." , """A jar of water, the microbes that were filtered from that water, the DNA extracted from those microbes, a subsample of that DNA.
""" ;
obo:IAO_0000115 "A material entity that has a material sample role. A material entity takes on the material sample role by being the output of a material samping process. That is, is selected for study, collected, and submitted to an institution for preservation or study."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment "This term has been replaced by OBI:specimen."^^xsd:string ;
rdfs:label "material sample"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000037
obo:bco_0000037 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000115 "An information content entity (?) that is the result of some data sampling process."@en ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
rdfs:label "data sample"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000038
obo:bco_0000038 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "This term has been deprecated until it is determined whether or not it is needed in the BCO. Should probably be replaced by a term from OBI or IAO." ;
rdfs:label "statistical sample"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000039
obo:bco_0000039 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000231 obo:IAO_0000103 ;
rdfs:comment "If sampling is a OBI planned process, that captures that it is protocal governed." ;
rdfs:label "protocol governed sampling activity"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000042
obo:bco_0000042 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000112 "Associating a museum specimen with a specific taxonomic concept based on its characters." , "Using BLAST to identify the taxa present in an environmental (metagenomic) sample." , "Using DNA barcoding to identify a plant species." , "Using a key to identify a plant in the field." ;
obo:IAO_0000115 "A process by which a material sample is associated with a taxon or taxa." ;
obo:IAO_0000116 "This term was made obsolete because of incorrect identifier format. It is replaced by BCO_0000042." ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:label "obsolete taxonomic identification process"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000043
obo:bco_0000043 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;
obo:IAO_0000116 "This term was made obsolete because of incorrect identifier format. It should be replaced by an external ontology term." ;
obo:IAO_0000231 obo:IAO_0000423 ;
obo:IAO_0000232 "Consider term from OBI or IAO."@en ;
dc:creator "Biocode Commons Ontology Hackathon" ;
rdfs:comment """Includes as output rubbings, casts, photographic prints, audio or video tapes.
Needs a better name. Current name is the definition."""@en ;
rdfs:label "process that yields a material representation of a material entity"@en ;
owl:deprecated "true"^^xsd:boolean .
#
# http://purl.obolibrary.org/obo/bco_0000044
obo:bco_0000044 a owl:Class ;
rdfs:subClassOf oboInOwl:ObsoleteClass ;