Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Switch back to Sphinx for documentation
Rename temp_path to work_path
Improve error handling and exception messages
- WorkflowFixtureNotAvailable replaced by FixtureNotFound and FixtureBindingError
- Proper use of exception chaining
Implements provider abstract classes using the Virtool Jobs API
Removes code relating to MongoDB from virtool_worlflow
Improves configuration fixtures
Moves most functionality from virtool_workflow_runtime to virtool_workflow
- virtool_workflow_runtime now contains code relating to the standalone runner process for workflows.
Switches to poetry for dependency and build management
Re-implement read trimming + caching
Support colored logging
Move virtool/workflow Dockerfile to repository root
Run integration tests
Config fixtures are funtions instead of ConfigFixture instances
CLI options such as --dev-mode are now flags instead of boolean options.

Add indexes fixture and tests
Add integration tests against Virtool's jobs API
Add provider abstract classes
- Avoid accessing the database directly
- Simplify testing by allowing for alternate implementations
Add FixtureGroup
Add dataclasses for various domain objects
- Jobs
- Subtractions
- Indexes
- References
- ...
Github action for testing the docker build
Github action for testing the PyPi package validity
Github action for verifying this changelog
Move virtool/workflow Dockerfile to repository root
Github action to create github releases
Github action to perform a a nightly build
Github action to create a release branch
Github action to run integration tests
Github action to performa a nightly build
- Releases virtool/workflow:nightly docker image
workflow test subcommand
- Runs a workflow in a test environment using docker-compose
Github action to push changes from master branch to develop branch