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Adjustments to docs
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nilseling committed Mar 31, 2022
1 parent 652f190 commit 2167543
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -35,7 +35,7 @@ cd ImcSegmentationPipeline
conda env create -f environment.yml
```

4. Configure CellProfiler to use the plugins by opening the CellProfiler GUI, selecting `Preferences` and setting the `CellProfiler plugins directory` to `path/to/ImcSegmentationPipeline/resources/ImcPluginsCP/plugins`. Alternatively you can clone the `ImcPluginsCP` repository individually and set the path correctly in CellProfiler.
4. Configure CellProfiler to use the plugins by opening the CellProfiler GUI, selecting `Preferences` and setting the `CellProfiler plugins directory` to `path/to/ImcSegmentationPipeline/resources/ImcPluginsCP/plugins` and **restart CellProfiler**. Alternatively you can clone the `ImcPluginsCP` repository individually and set the path correctly in CellProfiler.

5. Activate the environment created in 3. and start a jupyter instance

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2 changes: 1 addition & 1 deletion docs/index.md
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Expand Up @@ -51,7 +51,7 @@ cd ImcSegmentationPipeline
conda env create -f environment.yml
```

4. Configure CellProfiler to use the plugins by opening the CellProfiler GUI, selecting `Preferences` and setting the `CellProfiler plugins directory` to `path/to/ImcSegmentationPipeline/resources/ImcPluginsCP/plugins`. Alternatively you can clone the `ImcPluginsCP` repository individually and set the path correctly in CellProfiler.
4. Configure CellProfiler to use the plugins by opening the CellProfiler GUI, selecting `Preferences` and setting the `CellProfiler plugins directory` to `path/to/ImcSegmentationPipeline/resources/ImcPluginsCP/plugins` and **restart CellProfiler**. Alternatively you can clone the `ImcPluginsCP` repository individually and set the path correctly in CellProfiler.

5. Activate the environment created in 3. and start a jupyter instance

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