diff --git a/CMakeLists.txt b/CMakeLists.txt
index 153a115d2..2a998ec35 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -12,8 +12,8 @@ SET( ${PROJECT_NAME}_Variant "Full" ) # the particular variant of CaPTk (Full/Ne
# STRING(TIMESTAMP TODAY "%Y%m%d")
SET( PROJECT_VERSION_MAJOR 1 )
-SET( PROJECT_VERSION_MINOR 8 )
-SET( PROJECT_VERSION_PATCH 2.Alpha.2 )
+SET( PROJECT_VERSION_MINOR 9 )
+SET( PROJECT_VERSION_PATCH 0.Alpha )
SET( PROJECT_VERSION_TWEAK )
# check for the string "nonRelease" in the PROJECT_VERSION_PATCH variable
diff --git a/docs/1_credits.html b/docs/1_credits.html
index 39ab7edf0..f58629854 100644
--- a/docs/1_credits.html
+++ b/docs/1_credits.html
@@ -12,7 +12,7 @@
- Cancer Imaging Phenomics Toolkit (CaPTk) v.1.8.2.Alpha.2 | Contact: software@cbica.upenn.edu
+ Cancer Imaging Phenomics Toolkit (CaPTk) v.1.9.0.Alpha | Contact: software@cbica.upenn.edu
Disclaimer: CaPTk has been designed for non-commercial research purposes only and has not been reviewed or approved by the Food and Drug Administration (FDA). It is not intended or recommended for clinical application.
diff --git a/docs/BraTS_Metrics.html b/docs/BraTS_Metrics.html
index b24be41b6..8e562f04f 100644
--- a/docs/BraTS_Metrics.html
+++ b/docs/BraTS_Metrics.html
@@ -3,7 +3,7 @@
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha
@@ -38,7 +38,7 @@
-
+
diff --git a/docs/Training_Module.html b/docs/Training_Module.html
index a6575485d..2977685de 100644
--- a/docs/Training_Module.html
+++ b/docs/Training_Module.html
@@ -3,7 +3,7 @@
-
+
Cancer Imaging Phenomics Toolkit (CaPTk): Miscellaneous: Training Module
@@ -30,7 +30,7 @@
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha
@@ -38,7 +38,7 @@
-
+
diff --git a/docs/doxygen.css b/docs/doxygen.css
index 5e35db3f4..73ecbb2cb 100644
--- a/docs/doxygen.css
+++ b/docs/doxygen.css
@@ -1,4 +1,4 @@
-/* The standard CSS for doxygen 1.8.18 */
+/* The standard CSS for doxygen 1.8.17 */
body, table, div, p, dl {
font: 400 14px/22px Roboto,sans-serif;
@@ -1661,6 +1661,47 @@ tr.heading h2 {
/* @group Markdown */
+/*
+table.markdownTable {
+ border-collapse:collapse;
+ margin-top: 4px;
+ margin-bottom: 4px;
+}
+
+table.markdownTable td, table.markdownTable th {
+ border: 1px solid #2D4068;
+ padding: 3px 7px 2px;
+}
+
+table.markdownTableHead tr {
+}
+
+table.markdownTableBodyLeft td, table.markdownTable th {
+ border: 1px solid #2D4068;
+ padding: 3px 7px 2px;
+}
+
+th.markdownTableHeadLeft th.markdownTableHeadRight th.markdownTableHeadCenter th.markdownTableHeadNone {
+ background-color: #374F7F;
+ color: #FFFFFF;
+ font-size: 110%;
+ padding-bottom: 4px;
+ padding-top: 5px;
+}
+
+th.markdownTableHeadLeft {
+ text-align: left
+}
+
+th.markdownTableHeadRight {
+ text-align: right
+}
+
+th.markdownTableHeadCenter {
+ text-align: center
+}
+*/
+
table.markdownTable {
border-collapse:collapse;
margin-top: 4px;
diff --git a/docs/dynsections.js b/docs/dynsections.js
index 3174bd7be..ea0a7b39a 100644
--- a/docs/dynsections.js
+++ b/docs/dynsections.js
@@ -1,26 +1,25 @@
/*
- @licstart The following is the entire license notice for the JavaScript code in this file.
+ @licstart The following is the entire license notice for the
+ JavaScript code in this file.
- The MIT License (MIT)
+ Copyright (C) 1997-2017 by Dimitri van Heesch
- Copyright (C) 1997-2020 by Dimitri van Heesch
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
- Permission is hereby granted, free of charge, to any person obtaining a copy of this software
- and associated documentation files (the "Software"), to deal in the Software without restriction,
- including without limitation the rights to use, copy, modify, merge, publish, distribute,
- sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
- The above copyright notice and this permission notice shall be included in all copies or
- substantial portions of the Software.
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING
- BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
- DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
- @licend The above is the entire license notice for the JavaScript code in this file
+ @licend The above is the entire license notice
+ for the JavaScript code in this file
*/
function toggleVisibility(linkObj)
{
diff --git a/docs/ht_FeatureExtraction.html b/docs/ht_FeatureExtraction.html
index 271f5c268..6b1ca1af8 100644
--- a/docs/ht_FeatureExtraction.html
+++ b/docs/ht_FeatureExtraction.html
@@ -3,7 +3,7 @@
-
+
Cancer Imaging Phenomics Toolkit (CaPTk): Feature Extraction
@@ -30,7 +30,7 @@
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha
@@ -38,7 +38,7 @@
-
+
diff --git a/docs/index.qhp b/docs/index.qhp
index c7a707e4c..8afb84377 100644
--- a/docs/index.qhp
+++ b/docs/index.qhp
@@ -5,7 +5,7 @@
doxygen
-
+
@@ -87,7 +87,7 @@
-
+
@@ -192,7 +192,7 @@
-
+
diff --git a/docs/navtree.js b/docs/navtree.js
index 1e272d31d..edc31efc6 100644
--- a/docs/navtree.js
+++ b/docs/navtree.js
@@ -1,26 +1,24 @@
/*
- @licstart The following is the entire license notice for the JavaScript code in this file.
+ @licstart The following is the entire license notice for the
+ JavaScript code in this file.
- The MIT License (MIT)
+ Copyright (C) 1997-2019 by Dimitri van Heesch
- Copyright (C) 1997-2020 by Dimitri van Heesch
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of version 2 of the GNU General Public License as
+ published by the Free Software Foundation.
- Permission is hereby granted, free of charge, to any person obtaining a copy of this software
- and associated documentation files (the "Software"), to deal in the Software without restriction,
- including without limitation the rights to use, copy, modify, merge, publish, distribute,
- sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
- The above copyright notice and this permission notice shall be included in all copies or
- substantial portions of the Software.
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING
- BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
- DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
- @licend The above is the entire license notice for the JavaScript code in this file
+ @licend The above is the entire license notice
+ for the JavaScript code in this file
*/
var navTreeSubIndices = new Array();
var arrowDown = '▼';
diff --git a/docs/navtreedata.js b/docs/navtreedata.js
index f09eedd1d..feb9f0262 100644
--- a/docs/navtreedata.js
+++ b/docs/navtreedata.js
@@ -1,26 +1,24 @@
/*
- @licstart The following is the entire license notice for the JavaScript code in this file.
+@licstart The following is the entire license notice for the
+JavaScript code in this file.
- The MIT License (MIT)
+Copyright (C) 1997-2019 by Dimitri van Heesch
- Copyright (C) 1997-2020 by Dimitri van Heesch
+This program is free software; you can redistribute it and/or modify
+it under the terms of version 2 of the GNU General Public License as published by
+the Free Software Foundation
- Permission is hereby granted, free of charge, to any person obtaining a copy of this software
- and associated documentation files (the "Software"), to deal in the Software without restriction,
- including without limitation the rights to use, copy, modify, merge, publish, distribute,
- sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
- The above copyright notice and this permission notice shall be included in all copies or
- substantial portions of the Software.
+You should have received a copy of the GNU General Public License along
+with this program; if not, write to the Free Software Foundation, Inc.,
+51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING
- BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
- DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
- @licend The above is the entire license notice for the JavaScript code in this file
+@licend The above is the entire license notice
+for the JavaScript code in this file
*/
var NAVTREE =
[
diff --git a/docs/pages.html b/docs/pages.html
index 353a02e16..1d9103106 100644
--- a/docs/pages.html
+++ b/docs/pages.html
@@ -3,7 +3,7 @@
-
+
Cancer Imaging Phenomics Toolkit (CaPTk): Related Pages
@@ -30,7 +30,7 @@
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha
@@ -38,7 +38,7 @@
-
+
diff --git a/docs/resize.js b/docs/resize.js
index e1ad0fe3b..a0bb5f45b 100644
--- a/docs/resize.js
+++ b/docs/resize.js
@@ -1,26 +1,25 @@
/*
- @licstart The following is the entire license notice for the JavaScript code in this file.
+ @licstart The following is the entire license notice for the
+ JavaScript code in this file.
- The MIT License (MIT)
+ Copyright (C) 1997-2017 by Dimitri van Heesch
- Copyright (C) 1997-2020 by Dimitri van Heesch
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
- Permission is hereby granted, free of charge, to any person obtaining a copy of this software
- and associated documentation files (the "Software"), to deal in the Software without restriction,
- including without limitation the rights to use, copy, modify, merge, publish, distribute,
- sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
- The above copyright notice and this permission notice shall be included in all copies or
- substantial portions of the Software.
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING
- BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
- DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
- @licend The above is the entire license notice for the JavaScript code in this file
+ @licend The above is the entire license notice
+ for the JavaScript code in this file
*/
function initResizable()
{
@@ -92,9 +91,7 @@ function initResizable()
}
collapsedWidth=width;
}
- if (location.hash.slice(1)) {
- (document.getElementById(location.hash.slice(1))||document.body).scrollIntoView();
- }
+ (document.getElementById(location.hash.slice(1))||document.body).scrollIntoView();
}
function collapseExpand()
diff --git a/docs/seg_DL.html b/docs/seg_DL.html
index 8162d38b3..8f9b00dd1 100644
--- a/docs/seg_DL.html
+++ b/docs/seg_DL.html
@@ -3,7 +3,7 @@
-
+
Cancer Imaging Phenomics Toolkit (CaPTk): Deep Learning Segmentation
@@ -30,7 +30,7 @@
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha
@@ -38,7 +38,7 @@
-
+
diff --git a/docs/seg_GeoTrain.html b/docs/seg_GeoTrain.html
index d05b22960..4fc59d43e 100644
--- a/docs/seg_GeoTrain.html
+++ b/docs/seg_GeoTrain.html
@@ -3,7 +3,7 @@
-
+
Cancer Imaging Phenomics Toolkit (CaPTk): Geodesic Training Segmentation
@@ -30,7 +30,7 @@
Cancer Imaging Phenomics Toolkit (CaPTk)
- 1.8.2.Alpha.2
+ 1.9.0.Alpha