diff --git a/3_HowToGuides.txt b/3_HowToGuides.txt index 9537dbcfb..60dca678a 100644 --- a/3_HowToGuides.txt +++ b/3_HowToGuides.txt @@ -1251,7 +1251,7 @@ ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -l2s C:/refer \endverbatim - BraTS similarity Metrics between 2 label images: special considerations for metrics are done in this mode because output needs to be BraTS-compliant. \verbatim -${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -lsb C:/referenceMask.nii.gz +${CaPTk_InstallDir}/bin/Utilities.exe -i C:/referenceMask.nii.gz -lsb C:/test/predictedMask.nii.gz \endverbatim - Collect information from all images in a directory and put it in CSV \verbatim diff --git a/docs/ht_utilities.html b/docs/ht_utilities.html index caad14d17..c1de6c79d 100644 --- a/docs/ht_utilities.html +++ b/docs/ht_utilities.html @@ -97,7 +97,7 @@
  • Transform coordinates from world to image and vice-versa 
    ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test.nii.gz -i2w 10,10,30
 ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test.nii.gz -w2i 10.5,10.1,30.6
  • Label similarity Metrics between 2 label images: pure mathematical formulations are given as output 
    ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -l2s C:/referenceMask.nii.gz
    • -
  • BraTS similarity Metrics between 2 label images: special considerations for metrics are done in this mode because output needs to be BraTS-compliant. 
    ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/outputMask.nii.gz -lsb C:/referenceMask.nii.gz
    • +
  • BraTS similarity Metrics between 2 label images: special considerations for metrics are done in this mode because output needs to be BraTS-compliant. 
    ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/referenceMask.nii.gz -lsb C:/test/predictedMask.nii.gz
  • Collect information from all images in a directory and put it in CSV 
    ${CaPTk_InstallDir}/bin/Utilities.exe -i C:/test/inputDirectory -o C:/test/inputDirectoryProperties.csv \
 -co 1 \ # enable recursion
 -cF volume \ # only process files that contain this string pattern