From 5789f351ddd1b02d3da86e9efcdf9006bfa6ccbc Mon Sep 17 00:00:00 2001 From: Andrea Date: Thu, 7 Jul 2022 11:03:10 +0200 Subject: [PATCH] update defaults --- Vseq.ini | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Vseq.ini b/Vseq.ini index e978883..4e7c8b4 100644 --- a/Vseq.ini +++ b/Vseq.ini @@ -4,7 +4,7 @@ min_ions_matched = 2 # Min. number of matched ions required in a candidate precursor_tolerance = 0.3 # Tolerance in Th (To match ExpNeutralMass to m/z values in mgf) fragment_tolerance = 15 # Tolerance in ppm (Max. ppm error) best_n = 5 # Number of candidates to make Vseq plots for -sort_by = ions_matched # Criterion to sort candidates by (Options = ions_matched, e_score, product, v_score, hyperscore) +sort_by = hyperscore # Criterion to sort candidates by (Options = ions_matched, e_score, product, v_score, hyperscore) vseq_threshold = 10 # Min. value to plot VseqExplorer results ppm_plot = 30 # Max. ppm error for fragments in the interpreted plot parallelize = candidate # Criterion to parallelize by (Options = candidate, sequence, both)