docker-compose-os.yml

#For OpenStack
version: "3.7"

services:
  nginx:
    restart: always
    build:
      context: ./docker-svc/nginx/
      dockerfile: Dockerfile
    container_name: nginx
    ports:
      - "80:80"

  irida_web:
    restart: always
    image: quay.io/combat-tb/irida:v0.1.3
    # build:
    #   context: ./docker-svc/irida
    #   dockerfile: Dockerfile
    container_name: irida_web
    depends_on:
      - irida_mysql
    ports:
      - "8080:8080"
    volumes:
      # - irida_web_data:/data/irida
      - /data/irida:/data/irida

  irida_mysql:
    restart: always
    image: mysql:5.7.18
    container_name: irida_mysql
    environment:
      MYSQL_ROOT_PASSWORD: rootpasswd
      MYSQL_DATABASE: irida_db
      MYSQL_USER: irida_user
      MYSQL_PASSWORD: irida_passwd
    command: mysqld --sql_mode=""
    volumes:
      # - irida_mysql_data:/var/lib/mysql
      - /data/irida_mysql_data:/var/lib/mysql
    ports:
      - "3306:3306"

  irida_galaxy:
    restart: always
    image: quay.io/combat-tb/galaxy:v0.1.3
    # build:
    #   context: ./docker-svc/galaxy
    #   dockerfile: Dockerfile
    container_name: irida_galaxy
    environment:
      GALAXY_CONFIG_BRAND: "COMBAT-TB Workbench"
      # PROXY_PREFIX: /galaxy
      # GALAXY_CONFIG_NGINX_X_ACCEL_REDIRECT_BASE: /galaxy/_x_accel_redirect
      # GALAXY_CONFIG_NGINX_X_ARCHIVE_FILES_BASE: /galaxy/_x_accel_redirect
      # GALAXY_CONFIG_NGINX_UPLOAD_PATH: /galaxy/_upload
      GALAXY_LOGGING: full
    volumes:
      # - irida_web_data:/data/irida
      # - irida_galaxy_data:/export
      - /data/irida:/data/irida
      - /data/irida_galaxy_data:/export
    ports:
      - "9090:80"
      - "21:21"
      - "8800:8800"
      - "9002:9002"

# https://docs.openstack.org/project-deploy-guide/kolla-ansible/ocata/quickstart.html#build-container-images
networks:
  default:
    driver: bridge
    driver_opts:
      com.docker.network.driver.mtu: 1450
# volumes:
#   irida_mysql_data:
#   irida_web_data:
#   irida_galaxy_data: