Improve/Re-do Project Architecture

[CarlosGTrejo]

After the implementation of docker, I noticed how messy our file structure became.
Now that I've been working on #11 (Improving the Project Workflow) I've encountered issues trying to implement code tests, code coverage, and test coverage. For this reason, the entire project file system needs to change.

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With that said, this will be the example we will follow: https://github.com/navdeep-G/samplemod
Not everything will be exactly like that, but we will implement the things that our project can benefit from.