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Processing Detail

Collection Success Error Total Unique Instance #Tissue #Assay #Cells
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies - - - - - 881081
The integrated Human Lung Cell Atlas - - - - - 584944
Tabula Sapiens 391 19 1156 45 3 483152
Cross-tissue immune cell analysis reveals tissue-specific features in humans 369 31 891 17 3 329762
Single-nucleus cross-tissue molecular reference maps to decipher disease gene function 59 45 121 8 1 209126
Sampling peripheral blood and matched nasal swabs from donors with prior immunodeficiencies and autoimmune conditions infected with SARS-CoV-2 23 3 26 1 1 97499
Urethral luminal epithelia are castration-insensitive cells of the proximal prostate 25 0 32 2 2 47435
Tabula Muris Senis 9 0 9 1 1 28867
A transcriptional cross species map of pancreatic islet cells 3 1 4 1 1 26474

Details about each dataset:

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
  • Dataset Name: DCM/ACM heart cell atlas: All cells
  • Tissue:
    4 Tissues apex of heart, heart left ventricle, heart right ventricle, interventricular septum
  • Disease:
    Normal, 3 Diseases arrhythmogenic right ventricular cardiomyopathy, dilated cardiomyopathy, non-compaction cardiomyopathy
  • Assay: 10x 3' v2, 10x 3' v3
  • Organism: Homo sapiens
  • Cells: 881.081
  • Contact: Norbert Hübner
  • Publication: Reichart et al. (2022) Science
  • Cellxgene Link
The integrated Human Lung Cell Atlas
  • Dataset Name: An integrated cell atlas of the human lung in health and disease (core)
  • Tissue:
    3 Tissues lung parenchyma, nose, respiratory airway
  • Disease: Normal
  • Assay: 10x 3' v1, 10x 3' v2, 10x 3' v3, 10x 5' v1, 10x 5' v2
  • Organism: Homo sapiens
  • Cells: 584.944
  • Contact: Malte D. Luecken
  • Publication: Sikkema et al. (2023) Nat Med
  • Cellxgene Link
Tabula Sapiens
  • Dataset Name: Tabula Sapiens - All Cells
  • Tissue:
    45 Tissues adipose tissue, anterior part of tongue, aorta, bladder organ, blood, bone marrow, cardiac atrium, cardiac ventricle, conjunctiva, cornea, coronary artery, endocrine pancreas, endometrium, exocrine pancreas, eye, inguinal lymph node, kidney, lacrimal gland, large intestine, liver, lung, lymph node, mammary gland, muscle of abdomen, muscle of pelvic diaphragm, muscle tissue, myometrium, parotid gland, posterior part of tongue, prostate gland, rectus abdominis muscle, retinal neural layer, sclera, skin of abdomen, skin of body, skin of chest, small intestine, spleen, subcutaneous adipose tissue, sublingual gland, thymus, tongue, trachea, uterus, vasculature
  • Disease: Normal
  • Assay: 10x 3' v3, 10x 5' transcription profiling, Smart-seq2
  • Organism: Homo sapiens
  • Cells: 483.152
  • Contact: Angela Pisco
  • Publication: The Tabula Sapiens Consortium* et al. (2022) Science
  • Cellxgene Link
Cross-tissue immune cell analysis reveals tissue-specific features in humans
  • Dataset Name: Global
  • Tissue:
    17 Tissues blood, bone marrow, caecum, duodenum, ileum, jejunal epithelium, lamina propria, liver, lung, mesenteric lymph node, omentum, sigmoid colon, skeletal muscle tissue, spleen, thoracic lymph node, thymus, transverse colon
  • Disease: Normal
  • Assay: 10x 3' v3, 10x 5' v1, 10x 5' v2
  • Organism: Homo sapiens
  • Cells: 329.762
  • Contact: Sarah Teichmann
  • Publication: Domínguez Conde et al. (2022) Science
  • Cellxgene Link
Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
  • Dataset Name: Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
  • Tissue:
    8 Tissues anterior wall of left ventricle, breast, esophagus muscularis mucosa, gastrocnemius, lingula of left lung, mucosa, prostate gland, skin of leg
  • Disease: Normal
  • Assay: 10x 3' v2
  • Organism: Homo sapiens
  • Cells: 209.126
  • Contact: Aviv Regev
  • Publication: Eraslan et al. (2022) Science
  • Cellxgene Link
Sampling peripheral blood and matched nasal swabs from donors with prior immunodeficiencies and autoimmune conditions infected with SARS-CoV-2
Urethral luminal epithelia are castration-insensitive cells of the proximal prostate
  • Dataset Name: Urethral luminal epithelia are castration-insensitive cells of the proximal prostate - All Mouse Cells
  • Tissue: Prostate gland, Urethra
  • Disease: Normal
  • Assay: 10x 3' v2, 10x 3' v3
  • Organism: Mus musculus
  • Cells: 47.435
  • Contact: Douglas Strand
  • Publication: Joseph et al. (2020) Prostate
  • Cellxgene Link
Tabula Muris Senis
A transcriptional cross species map of pancreatic islet cells