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DESCRIPTION
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DESCRIPTION
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Package: exFINDER
Type: Package
Title: exFINDER: identify external communication signals using single-cell transcriptomics data (Title Case)
Version: 1.0.0
Author: person("Changhan", "He", , "changhanhe@gmail.com", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-1349-0075"))
Maintainer: The package maintainer <changhanhe@gmail.com>
Description: exFINDER identifies external signals received by the cells in the single-cell transcriptomics datasets by utilizing the prior knowledge of signaling pathways. In particular, exFINDER can uncover external signals that activate the given target genes, infer the external signal-target signaling network (exSigNet), and perform quantitative analysis on exSigNets.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: R (>= 4.0.0)
LazyData: true
LazyDataCompression: xz
Imports:
clusterProfiler,
igraph,
pheatmap,
stringr,
org.Mm.eg.db,
org.Hs.eg.db,
org.Dr.eg.db,
stats,
Seurat,
forcats,
ggraph,
RColorBrewer,
qpdf,
magrittr,
factoextra,
cluster,
ggfortify,
BioTIP,
GenomicRanges,
Hmisc,
MASS,
dplyr,
ggplot2,
patchwork,
psych,
CellChat,
base,
extrafont
Suggests:
knitr,
rmarkdown
VignetteBuilder: knitr