- extend
godata()
to support passing a data.frame (can be output ofread.gaf()
orread.blast2go()
) to 'annoDb' (2023-01-16, Tue) - deprecate 'OrgDb' and introduce new parameter 'annoDb' in
godata()
- standardize the output of
read.gaf()
andread.blast2go()
- optimize
buildGOmap()
- Bioconductor RELEASE_3_18 (2023-10-25, Wed)
- use
check_installed()
to check package dependency (2023-09-12, Tue, #43)
read.blast2go()
to parse 'blast2go' result (2023-07-10, Mon, #41, #42)- move
buildGOmap()
andread.gaf()
from 'clusterProfiler' (2023-07-10, Mon)
- semantic similarity measurement support for MPO (2023-04-06, Thu)
- TCSS semantic similarity measurement support for DO and MPO (2023-04-06, Thu)
- Bioconductor RELEASE_3_17 (2023-05-03, Wed)
- Bioconductor RELEASE_3_16 (2022-11-02, Wed)
- Replacing DO.db with HDO.db (2022-07-29, Mon)
- Bioconductor 3.15 release
- Avoid eval-parse in
load_OrgDb()
(2022-01-10, Mon)
- Bioconductor 3.14 release
- TCSS method (@qibaiqi, #35; 2021-08-02, Mon)
- Bioconductor 3.13 release
- bug fixed according to the update of GO.db (2020-10-29, Thu)
- Bioconductor 3.12 release (2020-10-28, Wed)
- new site, https://yulab-smu.top/biomedical-knowledge-mining-book/ for documentation (2020-09-04, Fri)
- update vignette
- update
data/gotbl
- bug fixed of IC method when input IDs contain invalid terms. (2020-07-25, Sat)
- Bioconductor 3.11 release
- add new citation (2020-03-19, Thu)
- fixed compiling error due to the change of Rcpp
mgeneSim
andmclusterSim
now always return matrix (2018-08-08, Wed)
- return NA for deprecated IDs (2018-01-09, Fri)