diff --git a/.buildkite/Manifest.toml b/.buildkite/Manifest.toml index f2d6685974..da552fa2f8 100644 --- a/.buildkite/Manifest.toml +++ b/.buildkite/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "dae5b8a0ef6cad3a789e38991e9bafc7e71f7ab5" [[deps.ADTypes]] -git-tree-sha1 = "fc02d55798c1af91123d07915a990fbb9a10d146" +git-tree-sha1 = "fa0822e5baee6e23081c2685ae27265dabee23d8" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.3.0" +version = "1.4.0" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -88,6 +88,12 @@ version = "2.3.0" uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" +[[deps.ArnoldiMethod]] +deps = ["LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" +uuid = "ec485272-7323-5ecc-a04f-4719b315124d" +version = "0.4.0" + [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "ed2ec3c9b483842ae59cd273834e5b46206d6dda" @@ -209,9 +215,9 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" +version = "0.1.9" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] @@ -295,9 +301,9 @@ version = "0.9.0+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "5db9da5fdeaa708c22ba86b82c49528f402497f2" +git-tree-sha1 = "f3b237289a5a77c759b2dd5d4c2ff641d67c4030" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.3.3" +version = "0.3.4" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -318,10 +324,10 @@ uuid = "159f3aea-2a34-519c-b102-8c37f9878175" version = "1.0.5" [[deps.CairoMakie]] -deps = ["CRC32c", "Cairo", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "9e8eaaff3e5951d8c61b7c9261d935eb27e0304b" +deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] +git-tree-sha1 = "3441d68ea63944a2b9b6de76603ec1c8b0fd4e3e" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.12.2" +version = "0.12.3" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -363,9 +369,9 @@ weakdeps = ["CUDA", "MPI"] [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "4af0b7f637ca43e41878d7c4b4acbb193e79798a" +git-tree-sha1 = "ffd0b5afde1816c9e61697e9510fbd9aa01b62de" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.8" +version = "0.14.9" weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] @@ -376,7 +382,7 @@ weakdeps = ["CUDA", "Krylov"] deps = ["Adapt", "ArtifactWrappers", "ClimaComms", "ClimaCore", "ClimaUtilities", "DataFrames", "Dates", "DocStringExtensions", "Insolation", "Interpolations", "IntervalSets", "LazyArtifacts", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities"] path = ".." uuid = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" -version = "0.12.3" +version = "0.12.4" weakdeps = ["CSV", "CUDA", "ClimaParams", "Flux", "HTTP", "StatsBase", "cuDNN"] [deps.ClimaLand.extensions] @@ -391,9 +397,9 @@ version = "0.10.7" [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "0424a41fcd86042faebe4b772a5bfa009250509b" +git-tree-sha1 = "d996079d35a7724ead861a3392b1df364f158a22" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.31" +version = "0.7.32" [deps.ClimaTimeSteppers.extensions] ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"] @@ -407,20 +413,18 @@ version = "0.7.31" [[deps.ClimaUtilities]] deps = ["Artifacts", "Dates"] -git-tree-sha1 = "af4af7e14e02861c1a13c9ee0efade4c863fab9a" +git-tree-sha1 = "9641bc5261562817fad2472f85325d8ae3047ac8" uuid = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513" -version = "0.1.8" +version = "0.1.9" [deps.ClimaUtilities.extensions] - CUDAUtilsExt = ["ClimaCore", "CUDA"] - DataHandlingExt = ["ClimaCore", "NCDatasets"] - InterpolationsRegridderExt = ["Interpolations", "ClimaCore"] - MPIUtilsExt = "ClimaComms" - NCFileReaderExt = "NCDatasets" - SpaceVaryingInputsExt = ["ClimaCore", "NCDatasets"] - TempestRegridderExt = "ClimaCoreTempestRemap" - TimeVaryingInputs0DExt = "ClimaCore" - TimeVaryingInputsExt = ["ClimaCore", "NCDatasets"] + ClimaUtilitiesClimaCommsCUDAExt = ["ClimaComms", "CUDA"] + ClimaUtilitiesClimaCommsExt = "ClimaComms" + ClimaUtilitiesClimaCoreExt = "ClimaCore" + ClimaUtilitiesClimaCoreInterpolationsExt = ["ClimaCore", "Interpolations"] + ClimaUtilitiesClimaCoreNCDatasetsExt = ["ClimaCore", "NCDatasets"] + ClimaUtilitiesClimaCoreTempestRemapExt = "ClimaCoreTempestRemap" + ClimaUtilitiesNCDatasetsExt = "NCDatasets" [deps.ClimaUtilities.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" @@ -613,9 +617,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "37d49a1f8eedfe68b7622075ff3ebe3dd0e8f327" +git-tree-sha1 = "2c6b7bf16fd850c551a765e313e7522ba455cbfd" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.2" +version = "6.151.4" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -644,10 +648,10 @@ version = "6.151.2" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "ee954c8b9d348b7a8a6aec5f28288bf5adecd4ee" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.37.0" +version = "3.6.2" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -665,6 +669,42 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] +git-tree-sha1 = "23c6df13ad8fcffde4b0596d798911d2e309fc2c" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.5.5" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = "Enzyme" + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = "ForwardDiff" + DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" + DifferentiationInterfaceReverseDiffExt = "ReverseDiff" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTapirExt = "Tapir" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DiskArrays]] deps = ["LRUCache", "OffsetArrays"] git-tree-sha1 = "ef25c513cad08d7ebbed158c91768ae32f308336" @@ -736,9 +776,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "a2f4588bde1588af6279729540099895f8dee843" +git-tree-sha1 = "88bc63137eb033acc3afe1b9875717889c718c46" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.4" +version = "0.7.5" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -830,6 +870,12 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" +[[deps.FastLapackInterface]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" +uuid = "29a986be-02c6-4525-aec4-84b980013641" +version = "2.0.4" + [[deps.FastRounding]] deps = ["ErrorfreeArithmetic", "LinearAlgebra"] git-tree-sha1 = "6344aa18f654196be82e62816935225b3b9abe44" @@ -893,9 +939,9 @@ version = "0.8.5" [[deps.Flux]] deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "a5475163b611812d073171583982c42ea48d22b0" +git-tree-sha1 = "edacf029ed6276301e455e34d7ceeba8cc34078a" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.15" +version = "0.14.16" [deps.Flux.extensions] FluxAMDGPUExt = "AMDGPU" @@ -994,9 +1040,9 @@ version = "6.2.1+6" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1" +git-tree-sha1 = "c154546e322a9c73364e8a60430b0f79b812d320" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.1.1" +version = "10.2.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -1012,15 +1058,15 @@ version = "0.26.5" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +git-tree-sha1 = "3e527447a45901ea392fe12120783ad6ec222803" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.5" +version = "0.73.6" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +git-tree-sha1 = "182c478a179b267dd7a741b6f8f4c3e0803795d6" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.5+0" +version = "0.73.6+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -1075,6 +1121,12 @@ git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" +[[deps.Graphs]] +deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "334d300809ae0a68ceee3444c6e99ded412bf0b3" +uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" +version = "1.11.1" + [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] git-tree-sha1 = "fc713f007cff99ff9e50accba6373624ddd33588" @@ -1114,6 +1166,12 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" + [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" @@ -1190,15 +1248,21 @@ version = "0.3.1" [[deps.InlineStrings]] deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "86356004f30f8e737eff143d57d41bd580e437aa" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.1" + + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "1a2a8e1f202523619225fb54adf458b9345cee9b" +git-tree-sha1 = "16912df0f91cf8bb100a4fe0730b7befab55f0d0" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.9.2" +version = "0.9.3" weakdeps = ["ClimaParams"] [deps.Insolation.extensions] @@ -1319,6 +1383,12 @@ git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" +[[deps.KLU]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" +uuid = "ef3ab10e-7fda-4108-b977-705223b18434" +version = "0.6.0" + [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] git-tree-sha1 = "8e5a339882cc401688d79b811d923a38ba77d50a" @@ -1426,6 +1496,16 @@ git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.15" +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.10.0" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1536,6 +1616,43 @@ version = "2.8.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" +[[deps.LinearSolve]] +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "7648cc20100504f4b453917aacc8520e9c0ecfb3" +uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" +version = "2.30.1" + + [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveCUDSSExt = "CUDSS" + LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + + [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea" @@ -1561,6 +1678,17 @@ git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.170" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" + [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" @@ -1624,15 +1752,15 @@ version = "0.5.13" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "ec3a60c9de787bc6ef119d13e07d4bfacceebb83" +git-tree-sha1 = "e11b0666b457e3bb60119f2ed4d063d2b68954d3" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.21.2" +version = "0.21.3" [[deps.MakieCore]] deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] -git-tree-sha1 = "c1c9da1a69f6c635a60581c98da252958c844d70" +git-tree-sha1 = "638bc817096742e8302f7b0b972ee5701fe00e97" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.8.2" +version = "0.8.3" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1654,6 +1782,18 @@ git-tree-sha1 = "1865d0b8a2d91477c8b16b49152a32764c7b1f5f" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" version = "0.6.0" +[[deps.MatrixFactorizations]] +deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" +uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" +version = "2.2.0" + +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.3" + [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" @@ -1735,9 +1875,9 @@ version = "4.5.1" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" +git-tree-sha1 = "78de319bce99d1d8c1d4fe5401f7cfc2627df396" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.17" +version = "0.9.18" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1797,6 +1937,38 @@ version = "3.7.2+0" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.NonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "40325dcea1cb84a108efe05966bbb1f4b98e5eea" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "3.13.0" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLSolversExt = "NLSolvers" + NonlinearSolveNLsolveExt = "NLsolve" + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSymbolicsExt = "Symbolics" + NonlinearSolveZygoteExt = "Zygote" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" @@ -1909,6 +2081,12 @@ git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.4.3" +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + [[deps.Packing]] deps = ["GeometryBasics"] git-tree-sha1 = "ec3edfe723df33528e085e632414499f26650501" @@ -2096,9 +2274,9 @@ version = "1.0.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" +version = "6.7.1+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -2183,6 +2361,12 @@ version = "3.23.1" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.RecursiveFactorization]] +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" +uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" +version = "0.2.23" + [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -2244,6 +2428,12 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + [[deps.SafeTestsets]] git-tree-sha1 = "81ec49d645af090901120a1542e67ecbbe044db3" uuid = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f" @@ -2251,9 +2441,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c15e03738d4170f92ba477273ef0528341f79a9a" +git-tree-sha1 = "7a6c5c8c38d2e37f45d4686c3598c20c1aebf48e" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.41.0" +version = "2.41.3" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2344,6 +2534,24 @@ git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" +[[deps.SimpleNonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "913754ccbbc78720a4542b56a6bdfbab1c84c8f2" +uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" +version = "1.10.0" + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" + SimpleNonlinearSolveTrackerExt = "Tracker" + SimpleNonlinearSolveZygoteExt = "Zygote" + + [deps.SimpleNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" @@ -2370,12 +2578,44 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" +[[deps.SparseDiffTools]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" +uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" +version = "2.19.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsPolyesterExt = "Polyester" + SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" version = "0.1.2" +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "eed2446b3c3dd58f6ded3168998b8b2cb3fc9229" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.3.3" + +[[deps.Sparspak]] +deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" +uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" +version = "0.3.9" + [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" @@ -2608,6 +2848,12 @@ version = "0.4.80" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" +[[deps.TriangularSolve]] +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] +git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" +uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" +version = "0.2.0" + [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -2693,9 +2939,21 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "833b06acd39f0abc97bc1170bd28e4f713619b37" +git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.5" +version = "0.4.6" + +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "e863582a41c5731f51fd050563ae91eb33cf09be" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.68" + +[[deps.VertexSafeGraphs]] +deps = ["Graphs"] +git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" +uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" +version = "0.2.0" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] diff --git a/NEWS.md b/NEWS.md index 8f3070a941..7afc3125cd 100644 --- a/NEWS.md +++ b/NEWS.md @@ -4,6 +4,17 @@ ClimaLand.jl Release Notes main -------- +v0.12.4 +-------- +- Fix various canopy flux bugs + PR [#641](https://github.com/CliMA/ClimaLand.jl/pull/641) +- Adds Richards to benchmark + PR [#648](https://github.com/CliMA/ClimaLand.jl/pull/648) +- Reduce allocations in update runoffs + PR [#664](https://github.com/CliMA/ClimaLand.jl/pull/664) +- Store z in cache instead of model + PR [#658](https://github.com/CliMA/ClimaLand.jl/pull/658) + v0.12.3 -------- - Add benchmark pipeline diff --git a/Project.toml b/Project.toml index 63374bcaa9..e990493153 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "ClimaLand" uuid = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" authors = ["Clima Land Team"] -version = "0.12.3" +version = "0.12.4" [deps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 4dfbf82356..738768a9bf 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "bf43a7452b446a9ba967dab8eeb0bc21ba10184f" [[deps.ADTypes]] -git-tree-sha1 = "fc02d55798c1af91123d07915a990fbb9a10d146" +git-tree-sha1 = "fa0822e5baee6e23081c2685ae27265dabee23d8" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.3.0" +version = "1.4.0" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -87,6 +87,12 @@ version = "2.3.0" uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" +[[deps.ArnoldiMethod]] +deps = ["LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" +uuid = "ec485272-7323-5ecc-a04f-4719b315124d" +version = "0.4.0" + [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "ed2ec3c9b483842ae59cd273834e5b46206d6dda" @@ -203,9 +209,9 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" +version = "0.1.9" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] @@ -289,9 +295,9 @@ version = "0.9.0+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "5db9da5fdeaa708c22ba86b82c49528f402497f2" +git-tree-sha1 = "f3b237289a5a77c759b2dd5d4c2ff641d67c4030" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.3.3" +version = "0.3.4" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] @@ -312,10 +318,10 @@ uuid = "159f3aea-2a34-519c-b102-8c37f9878175" version = "1.0.5" [[deps.CairoMakie]] -deps = ["CRC32c", "Cairo", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "9e8eaaff3e5951d8c61b7c9261d935eb27e0304b" +deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] +git-tree-sha1 = "3441d68ea63944a2b9b6de76603ec1c8b0fd4e3e" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.12.2" +version = "0.12.3" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -360,9 +366,9 @@ version = "0.6.2" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "4af0b7f637ca43e41878d7c4b4acbb193e79798a" +git-tree-sha1 = "ffd0b5afde1816c9e61697e9510fbd9aa01b62de" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.8" +version = "0.14.9" weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] @@ -373,7 +379,7 @@ weakdeps = ["CUDA", "Krylov"] deps = ["Adapt", "ArtifactWrappers", "ClimaComms", "ClimaCore", "ClimaUtilities", "DataFrames", "Dates", "DocStringExtensions", "Insolation", "Interpolations", "IntervalSets", "LazyArtifacts", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities"] path = ".." uuid = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" -version = "0.12.3" +version = "0.12.4" weakdeps = ["CSV", "CUDA", "ClimaParams", "Flux", "HTTP", "StatsBase", "cuDNN"] [deps.ClimaLand.extensions] @@ -388,9 +394,9 @@ version = "0.10.7" [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "0424a41fcd86042faebe4b772a5bfa009250509b" +git-tree-sha1 = "d996079d35a7724ead861a3392b1df364f158a22" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.31" +version = "0.7.32" [deps.ClimaTimeSteppers.extensions] ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"] @@ -404,20 +410,18 @@ version = "0.7.31" [[deps.ClimaUtilities]] deps = ["Artifacts", "Dates"] -git-tree-sha1 = "af4af7e14e02861c1a13c9ee0efade4c863fab9a" +git-tree-sha1 = "9641bc5261562817fad2472f85325d8ae3047ac8" uuid = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513" -version = "0.1.8" +version = "0.1.9" [deps.ClimaUtilities.extensions] - CUDAUtilsExt = ["ClimaCore", "CUDA"] - DataHandlingExt = ["ClimaCore", "NCDatasets"] - InterpolationsRegridderExt = ["Interpolations", "ClimaCore"] - MPIUtilsExt = "ClimaComms" - NCFileReaderExt = "NCDatasets" - SpaceVaryingInputsExt = ["ClimaCore", "NCDatasets"] - TempestRegridderExt = "ClimaCoreTempestRemap" - TimeVaryingInputs0DExt = "ClimaCore" - TimeVaryingInputsExt = ["ClimaCore", "NCDatasets"] + ClimaUtilitiesClimaCommsCUDAExt = ["ClimaComms", "CUDA"] + ClimaUtilitiesClimaCommsExt = "ClimaComms" + ClimaUtilitiesClimaCoreExt = "ClimaCore" + ClimaUtilitiesClimaCoreInterpolationsExt = ["ClimaCore", "Interpolations"] + ClimaUtilitiesClimaCoreNCDatasetsExt = ["ClimaCore", "NCDatasets"] + ClimaUtilitiesClimaCoreTempestRemapExt = "ClimaCoreTempestRemap" + ClimaUtilitiesNCDatasetsExt = "NCDatasets" [deps.ClimaUtilities.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" @@ -610,9 +614,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "37d49a1f8eedfe68b7622075ff3ebe3dd0e8f327" +git-tree-sha1 = "2c6b7bf16fd850c551a765e313e7522ba455cbfd" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.2" +version = "6.151.4" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -641,10 +645,10 @@ version = "6.151.2" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "ee954c8b9d348b7a8a6aec5f28288bf5adecd4ee" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.37.0" +version = "3.6.2" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -662,23 +666,48 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] +git-tree-sha1 = "23c6df13ad8fcffde4b0596d798911d2e309fc2c" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.5.5" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = "Enzyme" + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = "ForwardDiff" + DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" + DifferentiationInterfaceReverseDiffExt = "ReverseDiff" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTapirExt = "Tapir" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DiskArrays]] deps = ["LRUCache", "OffsetArrays"] git-tree-sha1 = "ef25c513cad08d7ebbed158c91768ae32f308336" uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3" version = "0.3.23" -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.11" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -739,9 +768,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "a2f4588bde1588af6279729540099895f8dee843" +git-tree-sha1 = "88bc63137eb033acc3afe1b9875717889c718c46" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.4" +version = "0.7.5" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -833,6 +862,12 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" +[[deps.FastLapackInterface]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" +uuid = "29a986be-02c6-4525-aec4-84b980013641" +version = "2.0.4" + [[deps.FastRounding]] deps = ["ErrorfreeArithmetic", "LinearAlgebra"] git-tree-sha1 = "6344aa18f654196be82e62816935225b3b9abe44" @@ -896,9 +931,9 @@ version = "0.8.5" [[deps.Flux]] deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "a5475163b611812d073171583982c42ea48d22b0" +git-tree-sha1 = "edacf029ed6276301e455e34d7ceeba8cc34078a" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.15" +version = "0.14.16" [deps.Flux.extensions] FluxAMDGPUExt = "AMDGPU" @@ -997,9 +1032,9 @@ version = "6.2.1+6" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1" +git-tree-sha1 = "c154546e322a9c73364e8a60430b0f79b812d320" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.1.1" +version = "10.2.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -1015,15 +1050,15 @@ version = "0.26.5" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +git-tree-sha1 = "3e527447a45901ea392fe12120783ad6ec222803" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.5" +version = "0.73.6" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +git-tree-sha1 = "182c478a179b267dd7a741b6f8f4c3e0803795d6" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.5+0" +version = "0.73.6+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -1090,6 +1125,12 @@ git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" +[[deps.Graphs]] +deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "334d300809ae0a68ceee3444c6e99ded412bf0b3" +uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" +version = "1.11.1" + [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] git-tree-sha1 = "fc713f007cff99ff9e50accba6373624ddd33588" @@ -1131,6 +1172,12 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" +[[deps.HostCPUFeatures]] +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] +git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" +uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" +version = "0.1.16" + [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" @@ -1145,9 +1192,9 @@ version = "0.3.23" [[deps.IOCapture]] deps = ["Logging", "Random"] -git-tree-sha1 = "8b72179abc660bfab5e28472e019392b97d0985c" +git-tree-sha1 = "b6d6bfdd7ce25b0f9b2f6b3dd56b2673a66c8770" uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" -version = "0.2.4" +version = "0.2.5" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools"] @@ -1213,15 +1260,21 @@ version = "0.3.1" [[deps.InlineStrings]] deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "86356004f30f8e737eff143d57d41bd580e437aa" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.1" + + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" [[deps.Insolation]] deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"] -git-tree-sha1 = "1a2a8e1f202523619225fb54adf458b9345cee9b" +git-tree-sha1 = "16912df0f91cf8bb100a4fe0730b7befab55f0d0" uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8" -version = "0.9.2" +version = "0.9.3" weakdeps = ["ClimaParams"] [deps.Insolation.extensions] @@ -1342,6 +1395,12 @@ git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" +[[deps.KLU]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] +git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" +uuid = "ef3ab10e-7fda-4108-b977-705223b18434" +version = "0.6.0" + [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] git-tree-sha1 = "8e5a339882cc401688d79b811d923a38ba77d50a" @@ -1454,6 +1513,16 @@ git-tree-sha1 = "8f7f3cabab0fd1800699663533b6d5cb3fc0e612" uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" version = "1.2.2" +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] +git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "1.10.0" +weakdeps = ["StaticArrays"] + + [deps.LazyArrays.extensions] + LazyArraysStaticArraysExt = "StaticArrays" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1564,6 +1633,43 @@ version = "2.8.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" +[[deps.LinearSolve]] +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "7648cc20100504f4b453917aacc8520e9c0ecfb3" +uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" +version = "2.30.1" + + [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveCUDSSExt = "CUDSS" + LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] + LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + + [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + [[deps.Literate]] deps = ["Base64", "IOCapture", "JSON", "REPL"] git-tree-sha1 = "596df2daea9c27da81eee63ef2cf101baf10c24c" @@ -1595,6 +1701,17 @@ git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" +[[deps.LoopVectorization]] +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" +uuid = "bdcacae8-1622-11e9-2a5c-532679323890" +version = "0.12.170" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" + [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" @@ -1644,15 +1761,15 @@ version = "0.5.13" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "ec3a60c9de787bc6ef119d13e07d4bfacceebb83" +git-tree-sha1 = "e11b0666b457e3bb60119f2ed4d063d2b68954d3" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.21.2" +version = "0.21.3" [[deps.MakieCore]] deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] -git-tree-sha1 = "c1c9da1a69f6c635a60581c98da252958c844d70" +git-tree-sha1 = "638bc817096742e8302f7b0b972ee5701fe00e97" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.8.2" +version = "0.8.3" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1680,6 +1797,18 @@ git-tree-sha1 = "1865d0b8a2d91477c8b16b49152a32764c7b1f5f" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" version = "0.6.0" +[[deps.MatrixFactorizations]] +deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" +uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" +version = "2.2.0" + +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.3" + [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" @@ -1753,17 +1882,11 @@ git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" version = "7.8.3" -[[deps.NLsolve]] -deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] -git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" -uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" -version = "4.5.1" - [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3d4617f943afe6410206a5294a95948c8d1b35bd" +git-tree-sha1 = "78de319bce99d1d8c1d4fe5401f7cfc2627df396" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.17" +version = "0.9.18" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1823,6 +1946,38 @@ version = "3.7.2+0" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.NonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "40325dcea1cb84a108efe05966bbb1f4b98e5eea" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "3.13.0" + + [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLSolversExt = "NLSolvers" + NonlinearSolveNLsolveExt = "NLsolve" + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSymbolicsExt = "Symbolics" + NonlinearSolveZygoteExt = "Zygote" + + [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" @@ -1935,6 +2090,12 @@ git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.4.3" +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + [[deps.Packing]] deps = ["GeometryBasics"] git-tree-sha1 = "ec3edfe723df33528e085e632414499f26650501" @@ -2112,9 +2273,9 @@ version = "1.0.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" +version = "6.7.1+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -2199,6 +2360,12 @@ version = "3.23.1" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.RecursiveFactorization]] +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" +uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" +version = "0.2.23" + [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -2266,11 +2433,17 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.42" + [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c15e03738d4170f92ba477273ef0528341f79a9a" +git-tree-sha1 = "7a6c5c8c38d2e37f45d4686c3598c20c1aebf48e" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.41.0" +version = "2.41.3" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2361,6 +2534,24 @@ git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" +[[deps.SimpleNonlinearSolve]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "913754ccbbc78720a4542b56a6bdfbab1c84c8f2" +uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" +version = "1.10.0" + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" + SimpleNonlinearSolveTrackerExt = "Tracker" + SimpleNonlinearSolveZygoteExt = "Zygote" + + [deps.SimpleNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" @@ -2387,12 +2578,44 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" +[[deps.SparseDiffTools]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" +uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" +version = "2.19.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsPolyesterExt = "Polyester" + SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" version = "0.1.2" +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "eed2446b3c3dd58f6ded3168998b8b2cb3fc9229" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.3.3" + +[[deps.Sparspak]] +deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" +uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" +version = "0.3.9" + [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" @@ -2625,6 +2848,12 @@ version = "0.4.80" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" +[[deps.TriangularSolve]] +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] +git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" +uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" +version = "0.2.0" + [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -2710,9 +2939,21 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "833b06acd39f0abc97bc1170bd28e4f713619b37" +git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.5" +version = "0.4.6" + +[[deps.VectorizationBase]] +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "e863582a41c5731f51fd050563ae91eb33cf09be" +uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" +version = "0.21.68" + +[[deps.VertexSafeGraphs]] +deps = ["Graphs"] +git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" +uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" +version = "0.2.0" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]