diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml index 676c7ee1..698a4283 100644 --- a/.dev/Manifest.toml +++ b/.dev/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.3" +julia_version = "1.10.4" manifest_format = "2.0" project_hash = "b280bcf3b481823c97fa1a62c1b5e65114b8fa18" @@ -79,9 +79,9 @@ version = "0.21.4" [[deps.JuliaFormatter]] deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "1c4880cb70a5c6c87ea36deccc3d7f9e7969c18c" +git-tree-sha1 = "4b0b04fe63e02eed776181e14ebc1f48d787ceec" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.56" +version = "1.0.59" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] diff --git a/Project.toml b/Project.toml index a596ab3c..8b22fb01 100644 --- a/Project.toml +++ b/Project.toml @@ -8,7 +8,6 @@ ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" -DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -34,7 +33,6 @@ CUDA = "3, 4, 5" Colors = "0.12" DataStructures = "0.18" DiffEqBase = "6" -DiffEqCallbacks = "2, 3" KernelAbstractions = "0.7, 0.8, 0.9" Krylov = "0.8, 0.9" LinearAlgebra = "1" @@ -45,4 +43,4 @@ NVTX = "0.3" SciMLBase = "1, 2" StaticArrays = "1" StatsBase = "0.33, 0.34" -julia = "1.8" +julia = "1.9" diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 039c092f..f5c92acd 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -1,19 +1,22 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.3" +julia_version = "1.10.4" manifest_format = "2.0" project_hash = "bd8d0393b0badb814c7eec6dee2d48c4c931c7ec" [[deps.ADTypes]] -git-tree-sha1 = "fc02d55798c1af91123d07915a990fbb9a10d146" +git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "EnzymeCore"] +version = "1.6.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesEnzymeCoreExt = "EnzymeCore" + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.ANSIColoredPrinters]] git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" @@ -24,12 +27,15 @@ deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" + [deps.AbstractFFTs.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -37,9 +43,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.36" +version = "0.1.37" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" @@ -76,17 +82,11 @@ version = "1.1.3" uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" -[[deps.ArnoldiMethod]] -deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" -uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.4.0" - [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ed2ec3c9b483842ae59cd273834e5b46206d6dda" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "8c5b39db37c1d0340bf3b14895fba160c2d6cbb5" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.11.0" +version = "7.14.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -96,7 +96,8 @@ version = "7.11.0" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceSparseArraysExt = "SparseArrays" + ArrayInterfaceStaticArraysExt = "StaticArrays" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] @@ -107,14 +108,15 @@ version = "7.11.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "420e2853770f50e5306b9d96b5a66f26e7c73bc6" +git-tree-sha1 = "ce2ca959f932f5dad70697dd93133d1167cf1e4e" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.9.4" +version = "1.10.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -160,21 +162,25 @@ uuid = "f1be7e48-bf82-45af-a471-ae754a193061" version = "0.2.20" [[deps.BitFlags]] -git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.8" +version = "0.1.9" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] -git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.5" +version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "9a9610fbe5779636f75229e423e367124034af41" +git-tree-sha1 = "5c0ffe1dff8cb7112de075f1b1cb32191675fcba" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.43" +version = "1.1.0" +weakdeps = ["BandedMatrices"] + + [deps.BlockArrays.extensions] + BlockArraysBandedMatricesExt = "BandedMatrices" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -189,9 +195,9 @@ version = "0.5.0" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "585a387a490f1c4bd88be67eea15b93da5e85db7" +git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.5" +version = "0.2.6" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -205,20 +211,10 @@ git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" version = "0.5.1" -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.24.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" - [[deps.ClimaComms]] -git-tree-sha1 = "d76590e99fa942e07f1e992a4d4a5e25121a26d6" +git-tree-sha1 = "2ca8c9ca6131a7be8ca262e6db79bc7aa94ab597" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.6.2" +version = "0.6.3" [deps.ClimaComms.extensions] ClimaCommsCUDAExt = "CUDA" @@ -229,10 +225,10 @@ version = "0.6.2" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "4af0b7f637ca43e41878d7c4b4acbb193e79798a" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "fa5335ad4b4596c70882c42366172b52aad7a499" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.8" +version = "0.14.10" [deps.ClimaCore.extensions] ClimaCoreCUDAExt = "CUDA" @@ -249,10 +245,10 @@ uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626" version = "0.2.10" [[deps.ClimaTimeSteppers]] -deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] +deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] path = ".." uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.31" +version = "0.7.33" [deps.ClimaTimeSteppers.extensions] ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"] @@ -266,21 +262,21 @@ version = "0.7.31" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" +git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.12" +version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.4" +version = "0.7.5" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +git-tree-sha1 = "b5278586822443594ff615963b0c09755771b3e0" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.25.0" +version = "3.26.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -315,6 +311,11 @@ git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" + [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" @@ -346,15 +347,15 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" +git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.1" +version = "2.4.2" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.5" +version = "1.5.6" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -411,9 +412,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "37d49a1f8eedfe68b7622075ff3ebe3dd0e8f327" +git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.2" +version = "6.151.5" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -441,16 +442,6 @@ version = "6.151.2" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" -[[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" -uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" - - [deps.DiffEqCallbacks.weakdeps] - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" - [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -463,42 +454,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "23c6df13ad8fcffde4b0596d798911d2e309fc2c" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.5" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = "Enzyme" - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = "ForwardDiff" - DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" - DifferentiationInterfaceReverseDiffExt = "ReverseDiff" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTapirExt = "Tapir" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -527,9 +482,9 @@ version = "0.9.3" [[deps.Documenter]] deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"] -git-tree-sha1 = "5461b2a67beb9089980e2f8f25145186b6d34f91" +git-tree-sha1 = "76deb8c15f37a3853f13ea2226b8f2577652de05" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "1.4.1" +version = "1.5.0" [[deps.DocumenterCitations]] deps = ["AbstractTrees", "Bibliography", "Dates", "Documenter", "Logging", "Markdown", "MarkdownAST", "OrderedCollections", "Unicode"] @@ -559,9 +514,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "a2f4588bde1588af6279729540099895f8dee843" +git-tree-sha1 = "d445df66dd8761a4c27df950db89c6a3a0629fe7" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.4" +version = "0.7.7" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -590,6 +545,12 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.Expronicon]] +deps = ["MLStyle", "Pkg", "TOML"] +git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" +uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" +version = "0.8.5" + [[deps.FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" @@ -616,21 +577,15 @@ version = "3.3.10+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "2be93e36303143c6fffd07e2222bbade35194d9e" +git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.3" +version = "0.3.5" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" - [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" @@ -652,22 +607,6 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" @@ -718,21 +657,15 @@ git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" - [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "3f74912a156096bd8fdbef211eff66ab446e7297" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.9+0" +version = "3.4.0+0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -741,16 +674,16 @@ uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.6" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "629693584cef594c3f6f99e76e7a7ad17e60e8d5" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.5" +version = "0.73.7" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" +git-tree-sha1 = "a8863b69c2a0859f2c2c87ebdc4c6712e88bdf0d" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.5+0" +version = "0.73.7+0" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -793,12 +726,6 @@ git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" -[[deps.Graphs]] -deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "334d300809ae0a68ceee3444c6e99ded412bf0b3" -uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.11.1" - [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" @@ -834,17 +761,11 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" -[[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" -uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.16" - [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" +git-tree-sha1 = "5e19e1e4fa3e71b774ce746274364aef0234634e" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.10.0+0" +version = "2.11.1+0" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -854,25 +775,20 @@ version = "0.3.23" [[deps.IOCapture]] deps = ["Logging", "Random"] -git-tree-sha1 = "8b72179abc660bfab5e28472e019392b97d0985c" +git-tree-sha1 = "b6d6bfdd7ce25b0f9b2f6b3dd56b2673a66c8770" uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" -version = "0.2.4" +version = "0.2.5" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" -[[deps.Inflate]] -git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" -uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.5" - [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.1.0+0" +version = "2024.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -891,9 +807,9 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] [[deps.InverseFunctions]] deps = ["Test"] -git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.14" +version = "0.1.15" weakdeps = ["Dates"] [deps.InverseFunctions.extensions] @@ -957,17 +873,11 @@ git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" - [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "8e5a339882cc401688d79b811d923a38ba77d50a" +git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.20" +version = "0.9.22" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -980,10 +890,16 @@ uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" version = "0.9.6" [[deps.KrylovKit]] -deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf", "VectorInterface"] -git-tree-sha1 = "3f3a92bbe8f568b689a7f7bc193f7c717d793751" +deps = ["GPUArraysCore", "LinearAlgebra", "PackageExtensionCompat", "Printf", "VectorInterface"] +git-tree-sha1 = "3c2a016489c38f35160a246c91a3f3353c47bb68" uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" -version = "0.7.1" +version = "0.8.1" + + [deps.KrylovKit.extensions] + KrylovKitChainRulesCoreExt = "ChainRulesCore" + + [deps.KrylovKit.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -999,9 +915,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "389aea28d882a40b5e1747069af71bdbd47a1cae" +git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "7.2.1" +version = "8.0.0" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1011,9 +927,9 @@ version = "7.2.1" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" +version = "0.0.30+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1034,9 +950,9 @@ version = "1.3.1" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4" +git-tree-sha1 = "5b0d630f3020b82c0775a51d05895852f8506f50" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.3" +version = "0.16.4" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1048,25 +964,15 @@ version = "0.16.3" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.15" +version = "0.1.17" [[deps.LazilyInitializedFields]] git-tree-sha1 = "8f7f3cabab0fd1800699663533b6d5cb3fc0e612" uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" version = "1.2.2" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] -git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "1.10.0" -weakdeps = ["StaticArrays"] - - [deps.LazyArrays.extensions] - LazyArraysStaticArraysExt = "StaticArrays" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1146,12 +1052,6 @@ git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.40.1+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1172,48 +1072,11 @@ version = "2.8.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" -[[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "7648cc20100504f4b453917aacc8520e9c0ecfb3" -uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.1" - - [deps.LinearSolve.extensions] - LinearSolveBandedMatricesExt = "BandedMatrices" - LinearSolveBlockDiagonalsExt = "BlockDiagonals" - LinearSolveCUDAExt = "CUDA" - LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] - LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] - LinearSolveHYPREExt = "HYPRE" - LinearSolveIterativeSolversExt = "IterativeSolvers" - LinearSolveKernelAbstractionsExt = "KernelAbstractions" - LinearSolveKrylovKitExt = "KrylovKit" - LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" - - [deps.LinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" - HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" - IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" - KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" - KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" - [[deps.Literate]] deps = ["Base64", "IOCapture", "JSON", "REPL"] -git-tree-sha1 = "596df2daea9c27da81eee63ef2cf101baf10c24c" +git-tree-sha1 = "eef2e1fc1dc38af90a18eb16e519e06d1fd10c2a" uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" -version = "2.18.0" +version = "2.19.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1240,28 +1103,22 @@ git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.170" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" - [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.1.0+0" +version = "2024.2.0+0" + +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "4099bb6809ac109bfc17d521dad33763bcf026b7" +git-tree-sha1 = "19d4bd098928a3263693991500d05d74dbdc2004" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.1+1" +version = "4.2.2+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1296,18 +1153,6 @@ git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899" uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391" version = "0.1.2" -[[deps.MatrixFactorizations]] -deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" -uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "2.2.0" - -[[deps.MaybeInplace]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" -uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.3" - [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" @@ -1360,12 +1205,6 @@ version = "0.3.1" Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" -[[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" - [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" @@ -1388,47 +1227,6 @@ version = "1.0.2" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" -[[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "ed5500c66b726ec9fe8c1796c0a600353246ecf8" -uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.12.4" - - [deps.NonlinearSolve.extensions] - NonlinearSolveBandedMatricesExt = "BandedMatrices" - NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" - NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" - NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" - NonlinearSolveMINPACKExt = "MINPACK" - NonlinearSolveNLSolversExt = "NLSolvers" - NonlinearSolveNLsolveExt = "NLsolve" - NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" - NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSymbolicsExt = "Symbolics" - NonlinearSolveZygoteExt = "Zygote" - - [deps.NonlinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" - FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" - LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" - MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" - NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" - NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" - SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" - SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.OffsetArrays]] -git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.14.0" -weakdeps = ["Adapt"] - - [deps.OffsetArrays.extensions] - OffsetArraysAdaptExt = "Adapt" - [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" @@ -1544,10 +1342,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.1" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "442e1e7ac27dd5ff8825c3fa62fbd1e86397974b" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "082f0c4b70c202c37784ce4bfbc33c9f437685bf" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.4" +version = "1.40.5" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1565,15 +1363,15 @@ version = "1.40.4" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "b3e2bae88cf07baf0a051fe09666b8ef97aefe93" +git-tree-sha1 = "9ff799e8fb8ed6717710feee3be3bc20645daa97" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.14" +version = "0.7.15" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" +git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.1" +version = "0.2.2" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] @@ -1622,15 +1420,33 @@ version = "1.2.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" +git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.3+1" +version = "6.7.1+1" + +[[deps.Qt6Declarative_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] +git-tree-sha1 = "e5dd466bf2569fe08c91a2cc29c1003f4797ac3b" +uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" +version = "6.7.1+2" + +[[deps.Qt6ShaderTools_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "1a180aeced866700d4bebc3120ea1451201f16bc" +uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" +version = "6.7.1+1" + +[[deps.Qt6Wayland_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] +git-tree-sha1 = "729927532d48cf79f49070341e1d918a65aba6b0" +uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" +version = "6.7.1+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +git-tree-sha1 = "e237232771fdafbae3db5c31275303e056afaa9f" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.4" +version = "2.10.1" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1654,9 +1470,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "3400ce27995422fb88ffcd3af9945565aad947f0" +git-tree-sha1 = "b450d967a770fb13d0e26358f58375e20361cf9c" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.23.1" +version = "3.26.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1676,12 +1492,6 @@ version = "3.23.1" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.23" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -1738,17 +1548,11 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.42" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c15e03738d4170f92ba477273ef0528341f79a9a" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "380a059a9fd18a56d98e50ed98d40e1c1202e662" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.41.0" +version = "2.46.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1776,9 +1580,10 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +deps = ["ArrayInterface"] +git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.2.0" +version = "1.4.1" [[deps.Scratch]] deps = ["Dates"] @@ -1795,10 +1600,6 @@ git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.1.1" -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -1810,30 +1611,6 @@ git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" -[[deps.SimpleNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "913754ccbbc78720a4542b56a6bdfbab1c84c8f2" -uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.10.0" - - [deps.SimpleNonlinearSolve.extensions] - SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" - SimpleNonlinearSolveTrackerExt = "Tracker" - SimpleNonlinearSolveZygoteExt = "Zygote" - - [deps.SimpleNonlinearSolve.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" @@ -1848,76 +1625,52 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" -[[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" -uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" - - [deps.SparseDiffTools.extensions] - SparseDiffToolsEnzymeExt = "Enzyme" - SparseDiffToolsPolyesterExt = "Polyester" - SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" - SparseDiffToolsSymbolicsExt = "Symbolics" - SparseDiffToolsZygoteExt = "Zygote" - - [deps.SparseDiffTools.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "eed2446b3c3dd58f6ded3168998b8b2cb3fc9229" -uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.3" - -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" - [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.4.0" -weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [deps.SpecialFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] +git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.10" +version = "1.1.1" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.0" -weakdeps = ["OffsetArrays", "StaticArrays"] +version = "1.5.1" [deps.StaticArrayInterface.extensions] StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" StaticArrayInterfaceStaticArraysExt = "StaticArrays" + [deps.StaticArrayInterface.weakdeps] + OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "6e00379a24597be4ae1ee6b2d882e15392040132" +git-tree-sha1 = "eeafab08ae20c62c44c8399ccb9354a04b80db50" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.5" -weakdeps = ["ChainRulesCore", "Statistics"] +version = "1.9.7" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" + [deps.StaticArrays.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + [[deps.StaticArraysCore]] git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" @@ -1945,17 +1698,20 @@ deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Re git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.3.1" -weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "25349bf8f63aa36acbff5e3550a86e9f5b0ef682" +git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.6" +version = "0.5.7" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -1986,9 +1742,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "a5f6f138b740c9d93d76f0feddd3092e6ef002b7" +git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.22" +version = "0.3.26" [[deps.TOML]] deps = ["Dates"] @@ -2002,10 +1758,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.1" +version = "1.12.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2047,24 +1803,18 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.24" [[deps.TranscodingStreams]] -git-tree-sha1 = "a947ea21087caba0a798c5e494d0bb78e3a1a3a0" +git-tree-sha1 = "96612ac5365777520c3c5396314c8cf7408f436a" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.9" +version = "0.11.1" weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.0" - [[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" +version = "0.1.9" [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" @@ -2102,9 +1852,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" +git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.20.0" +version = "1.21.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2113,9 +1863,9 @@ weakdeps = ["ConstructionBase", "InverseFunctions"] [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" +git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" +version = "1.6.4" [[deps.Unrolled]] deps = ["MacroTools"] @@ -2130,9 +1880,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" +git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.4" +version = "0.1.5" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -2141,21 +1891,9 @@ version = "0.2.0" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "833b06acd39f0abc97bc1170bd28e4f713619b37" +git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.5" - -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "e863582a41c5731f51fd050563ae91eb33cf09be" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.68" - -[[deps.VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" +version = "0.4.6" [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] @@ -2177,15 +1915,15 @@ version = "1.31.0+0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" +git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.7+0" +version = "2.13.1+0" [[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" +version = "1.1.41+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2273,9 +2011,9 @@ version = "0.1.1+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" +version = "1.17.0+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] @@ -2339,9 +2077,9 @@ version = "1.5.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "80c3218f29cbc47111ac87e7be5e69cc05c6dd36" +git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.11" +version = "0.4.12" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -2421,9 +2159,9 @@ version = "1.6.43+1" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.7+2" [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/docs/src/plotting_utils.jl b/docs/src/plotting_utils.jl index 5181448e..9f77eaad 100644 --- a/docs/src/plotting_utils.jl +++ b/docs/src/plotting_utils.jl @@ -94,9 +94,9 @@ function convergence_order(dts, errs, confidence) end function make_saving_callback(cb, u, t, integrator) - DECB = CTS.DiffEqCallbacks savevalType = typeof(cb(u, t, integrator)) - return DECB.SavingCallback(cb, DECB.SavedValues(typeof(t), savevalType)) + save_everystep = false + return CTS.NonInterpolatingSavingCallback(cb, CTS.SavedValues(typeof(t), savevalType), save_everystep) end function verify_convergence( diff --git a/perf/Manifest.toml b/perf/Manifest.toml index fe054c18..211cb695 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -1,30 +1,36 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.3" +julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "91043b753f41ba20c16213c104ebfdb72952bef4" +project_hash = "d745c873690a469f959f4288e4f7fe54ac972032" [[deps.ADTypes]] -git-tree-sha1 = "fc02d55798c1af91123d07915a990fbb9a10d146" +git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.3.0" -weakdeps = ["ChainRulesCore", "EnzymeCore"] +version = "1.6.1" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesEnzymeCoreExt = "EnzymeCore" + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" + [deps.AbstractFFTs.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -32,9 +38,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425" +git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.36" +version = "0.1.37" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" @@ -71,17 +77,11 @@ version = "1.2.0" uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" -[[deps.ArnoldiMethod]] -deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" -uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.4.0" - [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "ed2ec3c9b483842ae59cd273834e5b46206d6dda" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "8c5b39db37c1d0340bf3b14895fba160c2d6cbb5" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.11.0" +version = "7.14.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -91,7 +91,8 @@ version = "7.11.0" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceSparseArraysExt = "SparseArrays" + ArrayInterfaceStaticArraysExt = "StaticArrays" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] @@ -102,14 +103,15 @@ version = "7.11.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "420e2853770f50e5306b9d96b5a66f26e7c73bc6" +git-tree-sha1 = "ce2ca959f932f5dad70697dd93133d1167cf1e4e" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.9.4" +version = "1.10.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -151,20 +153,24 @@ version = "1.5.0" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] -git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.5" +version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "9a9610fbe5779636f75229e423e367124034af41" +git-tree-sha1 = "5c0ffe1dff8cb7112de075f1b1cb32191675fcba" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "0.16.43" +version = "1.1.0" +weakdeps = ["BandedMatrices"] + + [deps.BlockArrays.extensions] + BlockArraysBandedMatricesExt = "BandedMatrices" [[deps.BufferedStreams]] -git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec" +git-tree-sha1 = "6863c5b7fc997eadcabdbaf6c5f201dc30032643" uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d" -version = "1.2.1" +version = "1.2.2" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -179,39 +185,43 @@ version = "0.5.0" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "585a387a490f1c4bd88be67eea15b93da5e85db7" +git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.5" +version = "0.2.6" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "6e945e876652f2003e6ca74e19a3c45017d3e9f6" +git-tree-sha1 = "fdd9dfb67dfefd548f51000cc400bb51003de247" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.4.2" -weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] +version = "5.4.3" [deps.CUDA.extensions] ChainRulesCoreExt = "ChainRulesCore" EnzymeCoreExt = "EnzymeCore" SpecialFunctionsExt = "SpecialFunctions" + [deps.CUDA.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" + [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "c48f9da18efd43b6b7adb7ee1f93fe5f2926c339" +git-tree-sha1 = "97df9d4d6be8ac6270cb8fd3b8fc413690820cbd" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.9.0+0" +version = "0.9.1+1" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "5db9da5fdeaa708c22ba86b82c49528f402497f2" +git-tree-sha1 = "f3b237289a5a77c759b2dd5d4c2ff641d67c4030" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.3.3" +version = "0.3.4" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bcba305388e16aa5c879e896726db9e71b4942c6" +git-tree-sha1 = "afea94249b821dc754a8ca6695d3daed851e1f5a" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.14.0+1" +version = "0.14.1+0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -219,20 +229,10 @@ git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.0+2" -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.24.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" - [[deps.ClimaComms]] -git-tree-sha1 = "d76590e99fa942e07f1e992a4d4a5e25121a26d6" +git-tree-sha1 = "2ca8c9ca6131a7be8ca262e6db79bc7aa94ab597" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.6.2" +version = "0.6.3" [deps.ClimaComms.extensions] ClimaCommsCUDAExt = "CUDA" @@ -243,10 +243,10 @@ version = "0.6.2" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "4af0b7f637ca43e41878d7c4b4acbb193e79798a" +deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"] +git-tree-sha1 = "fa5335ad4b4596c70882c42366172b52aad7a499" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.8" +version = "0.14.10" weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] @@ -254,10 +254,10 @@ weakdeps = ["CUDA", "Krylov"] KrylovExt = "Krylov" [[deps.ClimaTimeSteppers]] -deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] +deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] path = ".." uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.31" +version = "0.7.33" weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "StatsBase"] [deps.ClimaTimeSteppers.extensions] @@ -265,9 +265,9 @@ weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "Sta [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1" +git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.12" +version = "0.1.13" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] @@ -277,9 +277,9 @@ version = "1.3.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.4" +version = "0.7.5" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -304,6 +304,11 @@ git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" + [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" @@ -335,9 +340,9 @@ version = "0.2.3" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.5" +version = "1.5.6" weakdeps = ["IntervalSets", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -389,9 +394,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "37d49a1f8eedfe68b7622075ff3ebe3dd0e8f327" +git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.2" +version = "6.151.5" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -419,16 +424,6 @@ version = "6.151.2" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" -[[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" -uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" - - [deps.DiffEqCallbacks.weakdeps] - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" - [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -441,42 +436,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "23c6df13ad8fcffde4b0596d798911d2e309fc2c" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.5" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = "Enzyme" - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = "ForwardDiff" - DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" - DifferentiationInterfaceReverseDiffExt = "ReverseDiff" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTapirExt = "Tapir" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -503,9 +462,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "a2f4588bde1588af6279729540099895f8dee843" +git-tree-sha1 = "d445df66dd8761a4c27df950db89c6a3a0629fe7" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.4" +version = "0.7.7" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -522,6 +481,12 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.Expronicon]] +deps = ["MLStyle", "Pkg", "TOML"] +git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" +uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" +version = "0.8.5" + [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" @@ -536,21 +501,15 @@ version = "3.3.10+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "2be93e36303143c6fffd07e2222bbade35194d9e" +git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.3" +version = "0.3.5" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" - [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" @@ -576,22 +535,6 @@ version = "1.11.0" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" @@ -643,21 +586,15 @@ git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" -[[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" -uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" - [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1" +git-tree-sha1 = "a74c3f1cf56a3dfcdef0605f8cdb7015926aae30" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.1.1" +version = "10.3.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -666,10 +603,10 @@ uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.6" [[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "518ebd058c9895de468a8c255797b0c53fdb44dd" +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] +git-tree-sha1 = "ab29216184312f99ff957b32cd63c2fe9c928b91" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.26.5" +version = "0.26.7" [[deps.GaussQuadrature]] deps = ["SpecialFunctions"] @@ -700,12 +637,6 @@ git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" -[[deps.Graphs]] -deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "334d300809ae0a68ceee3444c6e99ded412bf0b3" -uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.11.1" - [[deps.Graphviz_jll]] deps = ["Artifacts", "Cairo_jll", "Expat_jll", "JLLWrappers", "Libdl", "Pango_jll", "Pkg"] git-tree-sha1 = "a5d45833dda71048117e8a9828bef75c03b18b1c" @@ -736,17 +667,11 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" -[[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" -uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.16" - [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" +git-tree-sha1 = "5e19e1e4fa3e71b774ce746274364aef0234634e" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.10.0+0" +version = "2.11.1+0" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -758,22 +683,24 @@ git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" -[[deps.Inflate]] -git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" -uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.5" - [[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.2" + + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" + + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.1.0+0" +version = "2024.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -792,9 +719,9 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] [[deps.InverseFunctions]] deps = ["Test"] -git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" +git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.14" +version = "0.1.15" weakdeps = ["Dates"] [deps.InverseFunctions.extensions] @@ -835,9 +762,9 @@ version = "0.21.4" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "e9648d90370e2d0317f9518c9c6e0841db54a90b" +git-tree-sha1 = "5d3a5a206297af3868151bb4a2cf27ebce46f16d" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.31" +version = "0.9.33" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -845,17 +772,11 @@ git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" - [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "8e5a339882cc401688d79b811d923a38ba77d50a" +git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.20" +version = "0.9.22" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -868,16 +789,22 @@ uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" version = "0.9.6" [[deps.KrylovKit]] -deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf", "VectorInterface"] -git-tree-sha1 = "3f3a92bbe8f568b689a7f7bc193f7c717d793751" +deps = ["GPUArraysCore", "LinearAlgebra", "PackageExtensionCompat", "Printf", "VectorInterface"] +git-tree-sha1 = "3c2a016489c38f35160a246c91a3f3353c47bb68" uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" -version = "0.7.1" +version = "0.8.1" + + [deps.KrylovKit.extensions] + KrylovKitChainRulesCoreExt = "ChainRulesCore" + + [deps.KrylovKit.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "389aea28d882a40b5e1747069af71bdbd47a1cae" +git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "7.2.1" +version = "8.0.0" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -885,9 +812,9 @@ weakdeps = ["BFloat16s"] [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" +version = "0.0.30+0" [[deps.LLVMLoopInfo]] git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" @@ -913,19 +840,9 @@ version = "1.3.1" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" +git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.15" - -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] -git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "1.10.0" -weakdeps = ["StaticArrays"] - - [deps.LazyArrays.extensions] - LazyArraysStaticArraysExt = "StaticArrays" +version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] @@ -1000,12 +917,6 @@ git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.40.1+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1026,43 +937,6 @@ version = "2.8.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" -[[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "7648cc20100504f4b453917aacc8520e9c0ecfb3" -uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.1" - - [deps.LinearSolve.extensions] - LinearSolveBandedMatricesExt = "BandedMatrices" - LinearSolveBlockDiagonalsExt = "BlockDiagonals" - LinearSolveCUDAExt = "CUDA" - LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] - LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] - LinearSolveHYPREExt = "HYPRE" - LinearSolveIterativeSolversExt = "IterativeSolvers" - LinearSolveKernelAbstractionsExt = "KernelAbstractions" - LinearSolveKrylovKitExt = "KrylovKit" - LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" - - [deps.LinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" - HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" - IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" - KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" - KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" - [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea" @@ -1082,17 +956,6 @@ version = "0.3.28" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.170" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" - [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] git-tree-sha1 = "0b8cf121228f7dae022700c1c11ac1f04122f384" @@ -1101,15 +964,20 @@ version = "2.3.2" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.1.0+0" +version = "2024.2.0+0" + +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "4099bb6809ac109bfc17d521dad33763bcf026b7" +git-tree-sha1 = "19d4bd098928a3263693991500d05d74dbdc2004" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.1+1" +version = "4.2.2+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1138,18 +1006,6 @@ version = "0.1.8" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" -[[deps.MatrixFactorizations]] -deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" -uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "2.2.0" - -[[deps.MaybeInplace]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" -uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.3" - [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" @@ -1188,12 +1044,6 @@ weakdeps = ["Adapt", "CUDA"] [deps.MultiBroadcastFusion.extensions] MultiBroadcastFusionCUDAExt = ["CUDA", "Adapt"] -[[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" - [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] git-tree-sha1 = "53046f0483375e3ed78e49190f1154fa0a4083a1" @@ -1216,47 +1066,6 @@ version = "1.0.2" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" -[[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "ed5500c66b726ec9fe8c1796c0a600353246ecf8" -uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.12.4" - - [deps.NonlinearSolve.extensions] - NonlinearSolveBandedMatricesExt = "BandedMatrices" - NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" - NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" - NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" - NonlinearSolveMINPACKExt = "MINPACK" - NonlinearSolveNLSolversExt = "NLSolvers" - NonlinearSolveNLsolveExt = "NLsolve" - NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" - NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSymbolicsExt = "Symbolics" - NonlinearSolveZygoteExt = "Zygote" - - [deps.NonlinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" - FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" - LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" - MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" - NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" - NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" - SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" - SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.OffsetArrays]] -git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" -uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.14.0" -weakdeps = ["Adapt"] - - [deps.OffsetArrays.extensions] - OffsetArraysAdaptExt = "Adapt" - [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" @@ -1344,15 +1153,15 @@ version = "0.3.3" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "b3e2bae88cf07baf0a051fe09666b8ef97aefe93" +git-tree-sha1 = "9ff799e8fb8ed6717710feee3be3bc20645daa97" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.14" +version = "0.7.15" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" +git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.1" +version = "0.2.2" [[deps.PooledArrays]] deps = ["DataAPI", "Future"] @@ -1412,9 +1221,9 @@ version = "1.5.1" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.10.0" +version = "1.10.2" [[deps.ProtoBuf]] deps = ["BufferedStreams", "Dates", "EnumX", "TOML", "TranscodingStreams"] @@ -1450,9 +1259,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "3400ce27995422fb88ffcd3af9945565aad947f0" +git-tree-sha1 = "b450d967a770fb13d0e26358f58375e20361cf9c" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.23.1" +version = "3.26.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1472,12 +1281,6 @@ version = "3.23.1" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.23" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -1491,9 +1294,9 @@ version = "1.3.0" [[deps.Revise]] deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "12aa2d7593df490c407a3bbd8b86b8b515017f3e" +git-tree-sha1 = "85ddd93ea15dcd8493400600e09104a9e94bb18d" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.14" +version = "3.5.15" [[deps.RootSolvers]] deps = ["ForwardDiff"] @@ -1516,17 +1319,11 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.42" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "c15e03738d4170f92ba477273ef0528341f79a9a" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "380a059a9fd18a56d98e50ed98d40e1c1202e662" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.41.0" +version = "2.46.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1554,9 +1351,10 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" +deps = ["ArrayInterface"] +git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.2.0" +version = "1.4.1" [[deps.Scratch]] deps = ["Dates"] @@ -1566,9 +1364,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" +git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.3" +version = "1.4.5" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1579,34 +1377,6 @@ git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.1.1" -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.SimpleNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "913754ccbbc78720a4542b56a6bdfbab1c84c8f2" -uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.10.0" - - [deps.SimpleNonlinearSolve.extensions] - SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" - SimpleNonlinearSolveTrackerExt = "Tracker" - SimpleNonlinearSolveZygoteExt = "Zygote" - - [deps.SimpleNonlinearSolve.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SimpleTraits]] -deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" -uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" @@ -1621,76 +1391,52 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" -[[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" -uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" - - [deps.SparseDiffTools.extensions] - SparseDiffToolsEnzymeExt = "Enzyme" - SparseDiffToolsPolyesterExt = "Polyester" - SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" - SparseDiffToolsSymbolicsExt = "Symbolics" - SparseDiffToolsZygoteExt = "Zygote" - - [deps.SparseDiffTools.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "eed2446b3c3dd58f6ded3168998b8b2cb3fc9229" -uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.3" - -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" - [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.4.0" -weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [deps.SpecialFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] +git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.10" +version = "1.1.1" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" +git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.0" -weakdeps = ["OffsetArrays", "StaticArrays"] +version = "1.5.1" [deps.StaticArrayInterface.extensions] StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" StaticArrayInterfaceStaticArraysExt = "StaticArrays" + [deps.StaticArrayInterface.weakdeps] + OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "6e00379a24597be4ae1ee6b2d882e15392040132" +git-tree-sha1 = "eeafab08ae20c62c44c8399ccb9354a04b80db50" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.5" -weakdeps = ["ChainRulesCore", "Statistics"] +version = "1.9.7" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" + [deps.StaticArrays.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + [[deps.StaticArraysCore]] git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" @@ -1715,9 +1461,9 @@ version = "0.34.3" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "25349bf8f63aa36acbff5e3550a86e9f5b0ef682" +git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.6" +version = "0.5.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1736,9 +1482,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "a5f6f138b740c9d93d76f0feddd3092e6ef002b7" +git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.22" +version = "0.3.26" [[deps.TOML]] deps = ["Dates"] @@ -1752,10 +1498,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.1" +version = "1.12.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1796,24 +1542,18 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.24" [[deps.TranscodingStreams]] -git-tree-sha1 = "a947ea21087caba0a798c5e494d0bb78e3a1a3a0" +git-tree-sha1 = "d73336d81cafdc277ff45558bb7eaa2b04a8e472" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.9" +version = "0.10.10" weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] TestExt = ["Test", "Random"] -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.0" - [[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" +version = "0.1.9" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -1851,39 +1591,27 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" +git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.4" +version = "0.1.5" [[deps.VectorInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "833b06acd39f0abc97bc1170bd28e4f713619b37" +git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb" uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8" -version = "0.4.5" - -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "e863582a41c5731f51fd050563ae91eb33cf09be" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.68" - -[[deps.VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" +version = "0.4.6" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" +git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.7+0" +version = "2.13.1+0" [[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" +version = "1.1.41+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] @@ -1923,9 +1651,9 @@ version = "0.1.1+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" +version = "1.17.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/perf/Project.toml b/perf/Project.toml index ef0e1d1b..06731928 100644 --- a/perf/Project.toml +++ b/perf/Project.toml @@ -8,7 +8,6 @@ ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" -DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" @@ -35,7 +34,6 @@ ClimaCore = "0.10, 0.11, 0.12, 0.13, 0.14" ClimaTimeSteppers = "0.7" DataStructures = "0.18" DiffEqBase = "6" -DiffEqCallbacks = "2, 3" JET = "0.7, 0.8" JSON = "0.21" KernelAbstractions = "0.7, 0.8, 0.9" diff --git a/src/ClimaTimeSteppers.jl b/src/ClimaTimeSteppers.jl index 1fba8092..959f9016 100644 --- a/src/ClimaTimeSteppers.jl +++ b/src/ClimaTimeSteppers.jl @@ -57,7 +57,7 @@ export AbstractAlgorithmName, AbstractAlgorithmConstraint, Unconstrained, SSP array_device(::Union{Array, SArray, MArray}) = CPU() array_device(x) = CUDADevice() # assume CUDA -import DiffEqBase, SciMLBase, LinearAlgebra, DiffEqCallbacks, Krylov +import DiffEqBase, SciMLBase, LinearAlgebra, Krylov include(joinpath("utilities", "sparse_coeffs.jl")) include(joinpath("utilities", "fused_increment.jl")) diff --git a/src/integrators.jl b/src/integrators.jl index 4d15bcca..da68d579 100644 --- a/src/integrators.jl +++ b/src/integrators.jl @@ -40,6 +40,31 @@ mutable struct DistributedODEIntegrator{ tdir::tType # see https://docs.sciml.ai/DiffEqCallbacks/stable/output_saving/#DiffEqCallbacks.SavingCallback end +""" + SavedValues{tType<:Real, savevalType} + +A struct used to save values of the time in `t::Vector{tType}` and +additional values in `saveval::Vector{savevalType}`. + +From DiffEqCallbacks. +""" +struct SavedValues{tType, savevalType} + t::Vector{tType} + saveval::Vector{savevalType} +end + +""" + SavedValues(tType::DataType, savevalType::DataType) + +Return `SavedValues{tType, savevalType}` with empty storage vectors. + +From DiffEqCallbacks. +""" +function SavedValues(::Type{tType}, ::Type{savevalType}) where {tType, savevalType} + SavedValues{tType, savevalType}(Vector{tType}(), Vector{savevalType}()) +end + + # helper function for setting up min/max heaps for tstops and saveat function tstops_and_saveat_heaps(t0, tf, tstops, saveat) FT = typeof(tf) @@ -96,8 +121,7 @@ function DiffEqBase.__init( tstops, saveat = tstops_and_saveat_heaps(t0, tf, tstops, saveat) sol = DiffEqBase.build_solution(prob, alg, typeof(t0)[], typeof(save_func(u0, t0))[]) - saving_callback = - NonInterpolatingSavingCallback(save_func, DiffEqCallbacks.SavedValues(sol.t, sol.u), save_everystep) + saving_callback = NonInterpolatingSavingCallback(save_func, SavedValues(sol.t, sol.u), save_everystep) callback = DiffEqBase.CallbackSet(callback, saving_callback) isempty(callback.continuous_callbacks) || error("Continuous callbacks are not supported") diff --git a/test/Project.toml b/test/Project.toml index 0ce1a11b..a0bab750 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -7,7 +7,6 @@ ClimaTimeSteppers = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" -DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Krylov = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" @@ -30,7 +29,6 @@ ClimaComms = "0.4, 0.5, 0.6" ClimaCore = "0.14.8" DataStructures = "0.18" DiffEqBase = "6" -DiffEqCallbacks = "2" Distributions = "0.25" KernelAbstractions = "0.7, 0.8, 0.9" Krylov = "0.8, 0.9"