From 86e1b36f2f928e505bfc4543acaa50164a121f64 Mon Sep 17 00:00:00 2001 From: ashwini06 Date: Tue, 7 Dec 2021 13:47:43 +0100 Subject: [PATCH] =?UTF-8?q?Bump=20version:=208.2.3=20=E2=86=92=208.2.4?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 3 ++- BALSAMIC/__init__.py | 2 +- BALSAMIC/__version__.py | 2 +- BALSAMIC/containers/balsamic/Dockerfile | 2 +- CITATION.cff | 2 +- README.rst | 4 ++-- docs/bioinfo_softwares.rst | 2 +- docs/user_guide.rst | 2 +- 8 files changed, 10 insertions(+), 9 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index a62bb42d5..182a1258e 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 8.2.3 +current_version = 8.2.4 commit = True tag = True tag_name = v{new_version} @@ -19,3 +19,4 @@ tag_name = v{new_version} [bumpversion:file:docs/user_guide.rst] search = {current_version} replace = {new_version} + diff --git a/BALSAMIC/__init__.py b/BALSAMIC/__init__.py index 03cda64e8..49333fee8 100644 --- a/BALSAMIC/__init__.py +++ b/BALSAMIC/__init__.py @@ -1 +1 @@ -__version__ = "8.2.3" +__version__ = "8.2.4" diff --git a/BALSAMIC/__version__.py b/BALSAMIC/__version__.py index 03cda64e8..49333fee8 100644 --- a/BALSAMIC/__version__.py +++ b/BALSAMIC/__version__.py @@ -1 +1 @@ -__version__ = "8.2.3" +__version__ = "8.2.4" diff --git a/BALSAMIC/containers/balsamic/Dockerfile b/BALSAMIC/containers/balsamic/Dockerfile index 1a8f3e25b..645c69580 100644 --- a/BALSAMIC/containers/balsamic/Dockerfile +++ b/BALSAMIC/containers/balsamic/Dockerfile @@ -6,7 +6,7 @@ LABEL about.documentation="https://balsamic.readthedocs.io/" LABEL about.license="MIT License (MIT)" LABEL about.maintainer="Hassan Foroughi hassan dot foroughi at scilifelab dot se" LABEL about.description="Bioinformatic analysis pipeline for somatic mutations in cancer" -LABEL about.version="8.2.3" +LABEL about.version="8.2.4" ENV PATH="/opt/conda/bin/:${PATH}" ENV MUSL_LOCPATH="/usr/share/i18n/locales/musl" diff --git a/CITATION.cff b/CITATION.cff index 89feac8ff..ae868e70e 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -18,5 +18,5 @@ authors: - family-names: "Wirta" given-names: "Valtteri" title: "BALSAMIC: Bioinformatic Analysis pipeLine for SomAtic MutatIons in Cancer" -version: v8.2.3 +version: v8.2.4 url: "https://github.com/Clinical-Genomics/BALSAMIC" diff --git a/README.rst b/README.rst index c8624f598..2dff5930c 100644 --- a/README.rst +++ b/README.rst @@ -4,7 +4,7 @@ -

Bioinformatic Analysis pipeLine for SomAtic MutatIons in Cancer (v 8.2.3)

+

Bioinformatic Analysis pipeLine for SomAtic MutatIons in Cancer (v 8.2.4)

FastQ to Annotated VCF

@@ -56,7 +56,7 @@ Snakemake cli given that there is a proper config file created. .. |docker_latest_build_status| image:: https://github.com/Clinical-Genomics/BALSAMIC/actions/workflows/docker_build_push.yml/badge.svg -.. |docker_latest_release_status| image:: https://github.com/Clinical-Genomics/BALSAMIC/actions/workflows/docker_build_push_release.yml/badge.svg?tag=v8.2.3 +.. |docker_latest_release_status| image:: https://github.com/Clinical-Genomics/BALSAMIC/actions/workflows/docker_build_push_release.yml/badge.svg?tag=v8.2.4 .. |snakemake_badge| image:: https://img.shields.io/badge/snakemake-%E2%89%A55.12.3-brightgreen.svg diff --git a/docs/bioinfo_softwares.rst b/docs/bioinfo_softwares.rst index 9a1893219..d18c579ab 100644 --- a/docs/bioinfo_softwares.rst +++ b/docs/bioinfo_softwares.rst @@ -2,7 +2,7 @@ Workflow ======== -BALSAMIC ( **version** = 8.2.3 ) uses myriad of tools and softwares to analyze fastq files. This section covers why each +BALSAMIC ( **version** = 8.2.4 ) uses myriad of tools and softwares to analyze fastq files. This section covers why each one is included: usage and parameters, and relevant external links. diff --git a/docs/user_guide.rst b/docs/user_guide.rst index 4b1cdf5a0..a7f82161b 100644 --- a/docs/user_guide.rst +++ b/docs/user_guide.rst @@ -2,7 +2,7 @@ Short tutorial ============== -Here a short toturial is provided for BALSAMIC (**version** = 8.2.3). +Here a short toturial is provided for BALSAMIC (**version** = 8.2.4). Running a test sample ---------------------