From c9d0f58b5069cc7a1d53485e1df8903e5e10e199 Mon Sep 17 00:00:00 2001
From: khurrammaqbool <khurram.maqbool@outlook.com>
Date: Thu, 9 Jun 2022 12:23:11 +0200
Subject: [PATCH] add command to container tests

---
 container_tests/delly/delly.sh             | 2 +-
 container_tests/varcall_py3/varcall_py3.sh | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/container_tests/delly/delly.sh b/container_tests/delly/delly.sh
index 5ab2b92a3..7acdadb0c 100644
--- a/container_tests/delly/delly.sh
+++ b/container_tests/delly/delly.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 # Test if commands exist
 
-valid_commands=( "delly" )
+valid_commands=( "delly" "bcftools" )
 
 for valid_command in "${valid_commands[@]}"
 do
diff --git a/container_tests/varcall_py3/varcall_py3.sh b/container_tests/varcall_py3/varcall_py3.sh
index 3011d1fa2..8a677f65a 100644
--- a/container_tests/varcall_py3/varcall_py3.sh
+++ b/container_tests/varcall_py3/varcall_py3.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 # Test if commands exist
 
-valid_commands=( "bcftools" "samtools" "tabix" "vardict" "vardict-java" "svdb")
+valid_commands=( "bcftools" "samtools" "tabix" "vardict" "vardict-java" "svdb" "bwa" "tiddit")
 
 for valid_command in "${valid_commands[@]}"
 do