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Parallelize download_container rule #1066

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fevac opened this issue Jan 23, 2023 · 0 comments
Closed

Parallelize download_container rule #1066

fevac opened this issue Jan 23, 2023 · 0 comments
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fevac commented Jan 23, 2023

Description

Currently all containers are download one by one in a single rule and when a container fails to download the whole rule needs to be restarted from the beginning.

It would be nice that the download rule would run independently for each container. Similar to: #1064

Suggested solution

  • Modify download_container rule to be launched independently for each container

BALSAMIC version
11.0.2

Current affected rule if snakemake workflow related
download_container
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