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Add Delly #644

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khurrammaqbool opened this issue Jun 3, 2021 · 1 comment · Fixed by #645, #681 or #698
Closed

Add Delly #644

khurrammaqbool opened this issue Jun 3, 2021 · 1 comment · Fixed by #645, #681 or #698
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@khurrammaqbool

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@khurrammaqbool
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Is your feature request related to a problem? Please describe.
Delly calls somatic SVs as well as CNVs.

Describe the solution you'd like
Add delly as a rule to workflows.

Describe alternatives you've considered
NA

Additional context
https://github.com/dellytools/delly

Expected output for the feature
An indexed bcf file in output directory.

Current BALSAMIC version
7.2.2
@khurrammaqbool khurrammaqbool linked a pull request Jun 3, 2021 that will close this issue
Add Delly somatic SV caller [issue 644 ] #645
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@khurrammaqbool khurrammaqbool self-assigned this Jun 4, 2021
@khurrammaqbool
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Fixed in issue #645

@khurrammaqbool khurrammaqbool linked a pull request Jul 14, 2021 that will close this issue
Feat/delly tumor only rule #681
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@khurrammaqbool khurrammaqbool linked a pull request Jul 29, 2021 that will close this issue
Fix/delly not showing in workflow at runtime #698
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@hassanfa hassanfa mentioned this issue Aug 25, 2021
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