diff --git a/tests/conftest.py b/tests/conftest.py index 784d0f98bf..4310773e93 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -2678,7 +2678,7 @@ def nallo_deliverable_data(nallo_dir: Path, nallo_case_id: str, sample_id: str) def nallo_metrics_deliverables(nallo_analysis_dir: Path) -> list[dict]: """Returns the content of a mock metrics deliverables file.""" return read_yaml( - file_path=Path(nallo_analysis_dir, "nallo_case_enough_reads_metrics_deliverables.yaml") + file_path=Path(nallo_analysis_dir, "nallo_fixture_for_metrics_deliverables.yaml") ) diff --git a/tests/fixtures/analysis/nallo/nallo_case_enough_reads_metrics_deliverables.yaml b/tests/fixtures/analysis/nallo/nallo_fixture_for_metrics_deliverables.yaml similarity index 86% rename from tests/fixtures/analysis/nallo/nallo_case_enough_reads_metrics_deliverables.yaml rename to tests/fixtures/analysis/nallo/nallo_fixture_for_metrics_deliverables.yaml index 1da56c37f2..44e0066941 100644 --- a/tests/fixtures/analysis/nallo/nallo_case_enough_reads_metrics_deliverables.yaml +++ b/tests/fixtures/analysis/nallo/nallo_fixture_for_metrics_deliverables.yaml @@ -2,78 +2,80 @@ metrics: - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: mean_coverage step: multiqc value: 32.18 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: min_coverage step: multiqc value: 0.0 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: max_coverage step: multiqc value: 63906.0 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: coverage_bases step: multiqc value: 99366056494 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: length step: multiqc value: 3088286377 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: 1_x_pc step: multiqc value: 94.0 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: 5_x_pc step: multiqc value: 94.0 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: 10_x_pc step: multiqc value: 93.0 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: 30_x_pc step: multiqc value: 65.0 - condition: null header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: 50_x_pc step: multiqc value: 2.0 -- condition: null +- condition: + norm: gt + threshold: 25.0 header: null - id: ADM1_1 + id: ADM1 input: multiqc_data.json name: median_coverage step: multiqc - value: 13 \ No newline at end of file + value: 33 \ No newline at end of file