version.xml

<package name='BEAST.app' version='2.7.0'>
	<depends on='BEAST.base' atleast='2.7.0' atmost="2.7.9"/>
    <packageapp description="Create BEAST documentation"
              class="beast.app.tools.DocMaker"
              args=""
              icon=""
            />
    <packageapp description="Analyse logs of EBSP analysis for demographic reconstruction"
              class="beast.app.tools.EBSPAnalyser"
              args=""
              icon=""
            />
    <packageapp description="Analyse trace logs and produce statistics on traces"
              class="beast.app.tools.LogAnalyser"
              args=""
              icon=""
            />
    <packageapp description="Visualise and analyse BEAST models"
              class="beast.app.tools.ModelBuilder"
              args=""
              icon=""
            />
    <packageapp description="Represents an analysis of a list of trees obtained either directly from a logger or from a trace file. The set of tree topologies is calculated by given credible set probability threshold (default 95%)."
              class="beast.app.tools.TreeTraceAnalysis"
              args=""
              icon=""
            />
    <packageapp description="Does sanity checks on a BEAST package"
              class="beast.app.tools.PackageHealthChecker"
              args=""
              icon=""
            />
            <!--
			<service type="beast.pkgmgmt.NameSpaceInfo">
				<provider classname="beast.app.NameSpaceInfo"/>
			</service>
			-->
			
			<service type="beast.app.inputeditor.InputEditor">
				<provider classname="beast.app.inputeditor.AlignmentListInputEditor"/>
				<provider classname="beast.app.inputeditor.BEASTObjectInputEditor"/>
				<provider classname="beast.app.inputeditor.BooleanInputEditor"/>
				<provider classname="beast.app.inputeditor.DoubleInputEditor"/>
				<provider classname="beast.app.inputeditor.DoubleListInputEditor"/>
				<provider classname="beast.app.inputeditor.EnumInputEditor"/>
				<provider classname="beast.app.inputeditor.FileInputEditor"/>
				<provider classname="beast.app.inputeditor.FileListInputEditor"/>
				<provider classname="beast.app.inputeditor.IntegerInputEditor"/>
				<provider classname="beast.app.inputeditor.IntegerListInputEditor"/>
				<provider classname="beast.app.inputeditor.ListInputEditor"/>
				<provider classname="beast.app.inputeditor.LogFileInputEditor"/>
				<provider classname="beast.app.inputeditor.LogFileListInputEditor"/>
				<provider classname="beast.app.inputeditor.LoggerListInputEditor"/>
				<provider classname="beast.app.inputeditor.LongInputEditor"/>
				<provider classname="beast.app.inputeditor.MRCAPriorInputEditor"/>
				<provider classname="beast.app.inputeditor.OutFileInputEditor"/>
				<provider classname="beast.app.inputeditor.OutFileListInputEditor"/>
				<provider classname="beast.app.inputeditor.ParameterInputEditor"/>
				<provider classname="beast.app.inputeditor.ParametricDistributionInputEditor"/>
				<provider classname="beast.app.inputeditor.SiteModelInputEditor"/>
				<provider classname="beast.app.inputeditor.StringInputEditor"/>
				<provider classname="beast.app.inputeditor.TaxonSetInputEditor"/>
				<provider classname="beast.app.inputeditor.TaxonSetListInputEditor"/>
				<provider classname="beast.app.inputeditor.TipDatesInputEditor"/>
				<provider classname="beast.app.inputeditor.TreeFileInputEditor"/>
				<provider classname="beast.app.inputeditor.TreeFileListInputEditor"/>
				<provider classname="beast.app.inputeditor.XMLFileInputEditor"/>
				<provider classname="beast.app.inputeditor.XMLFileListInputEditor"/>
				<provider classname="beast.app.beauti.ClockModelListInputEditor"/>
				<provider classname="beast.app.beauti.ConstantPopulationInputEditor"/>
				<provider classname="beast.app.beauti.FrequenciesInputEditor"/>
				<provider classname="beast.app.beauti.GeneTreeForSpeciesTreeDistributionInputEditor"/>
				<provider classname="beast.app.beauti.OperatorListInputEditor"/>
				<provider classname="beast.app.beauti.PriorInputEditor"/>
				<provider classname="beast.app.beauti.PriorListInputEditor"/>
				<provider classname="beast.app.beauti.SpeciesTreePriorInputEditor"/>
				<provider classname="beast.app.beauti.StateNodeInitialiserListInputEditor"/>
				<provider classname="beast.app.beauti.StateNodeListInputEditor"/>
				<provider classname="beast.app.beauti.TreeDistributionInputEditor"/>
			</service>
	
			<!-- AlignmentImporter declares classes for parsing different alignment formats -->
			<service type="beast.app.inputeditor.AlignmentImporter">
				<provider classname="beast.app.inputeditor.NexusImporter"/>
				<provider classname="beast.app.inputeditor.FastaImporter"/>
				<provider classname="beast.app.inputeditor.XMLImporter"/>
			</service>
	
		    <service type="beast.base.core.BEASTInterface">
    		    <provider classname="beast.app.beauti.Fragment"/>
		        <provider classname="beast.app.draw.BEASTObjectSet"/>
        		<provider classname="beast.app.inputeditor.BeautiAlignmentProvider"/>
		        <provider classname="beast.app.inputeditor.BeautiConfig"/>
        		<provider classname="beast.app.inputeditor.BeautiConnector"/>
		        <provider classname="beast.app.inputeditor.BeautiDoc"/>
        		<provider classname="beast.app.inputeditor.BeautiPanelConfig"/>
		        <provider classname="beast.app.inputeditor.BeautiSubTemplate"/>
        		<provider classname="beast.app.seqgen.MergeDataWith"/>
		        <provider classname="beast.app.seqgen.SequenceSimulator"/>
        		<provider classname="beast.app.seqgen.SimulatedAlignment"/>
		        <provider classname="beast.app.tools.ClassEnumerator"/>
		        <provider classname="beast.app.tools.JarHealthChecker"/>
        		<provider classname="beast.app.tools.PackageHealthChecker"/>
		    </service>

			<!--
			<service type="beast.app.beauti.BeautiHelpAction">		</service>
			-->
			
			<!--			
			PriorProvider is for providing extra priors in the prior panel of BEAUti
			like MultiMonophyleticConstrains
			-->
			<service type="beast.app.beauti.PriorProvider">
				<provider classname="beast.app.beauti.MRCAPriorProvider"/>
			</service>
            	
</package>