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testDirectSimulator.xml
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testDirectSimulator.xml
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<beast version="2.0" namespace="beast.pkgmgmt:beast.base.core:beast.base.inference
:beast.base.evolution.alignment
:beast.base.evolution.tree
:beast.base.evolution.speciation
:beast.base.inference.distribution
:beast.base.inference.util
:beast.base.inference.parameter">
<run spec="DirectSimulator" nSamples="2">
<distribution spec="CompoundDistribution" id="fullModel">
<distribution spec="YuleModel" id="yuleModel">
<tree spec="Tree" id="tree">
<taxonset spec="TaxonSet">
<taxon spec="Taxon" id="t1"/>
<taxon spec="Taxon" id="t2"/>
<taxon spec="Taxon" id="t3"/>
<taxon spec="Taxon" id="t4"/>
<taxon spec="Taxon" id="t5"/>
</taxonset>
</tree>
<birthDiffRate spec="RealParameter" id="birthDiffRateParam" value="1.0"/>
</distribution>
<distribution spec="beast.base.inference.distribution.Prior" id="birthDiffRatePrior">
<distr spec="Exponential" id="xExpParamDist" mean="1"/>
<x spec="RealParameter" idref="birthDiffRateParam"/>
</distribution>
</distribution>
<logger logEvery="1" fileName="$(filebase).trees">
<log idref="tree"/>
</logger>
</run>
</beast>