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subject ID missing #4

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jmvera255 opened this issue Feb 28, 2024 · 0 comments
Open

subject ID missing #4

jmvera255 opened this issue Feb 28, 2024 · 0 comments

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@jmvera255
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It appears that the individual subject IDs for each cell were not included in the Seurat object data that can be downloaded from the T cell map portal. My work would greatly benefit from capturing subject-level variation for statistical testing. For instance, according to Table S2 from the corresponding publication, there were samples from 11 individual cancer patients for the BCC data but there is insufficient data available in the Seurat objects to group cells by subjects.

If you are able, can you update the downloadable Seurat objects to include subject ID or provide the cell barcode-to-subject id mappings for the CD8+ and CD4+ data sets?

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