Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Request for batch information in CD4.rds and CD8.rds #5

Open
ShellyCoder opened this issue Oct 6, 2024 · 0 comments
Open

Request for batch information in CD4.rds and CD8.rds #5

ShellyCoder opened this issue Oct 6, 2024 · 0 comments

Comments

@ShellyCoder
Copy link

Dear maintainers,

Thank you for providing such a great job, I'm using the T cell atlas, and it's been really helpful for my research!

I downloaded the T cell atlas CD4.rds and CD8.rds files from https://singlecell.mdanderson.org/TCM/, both of which are stored as Seurat objects.

  1. Within SeuratObj@meta.data, there is a batch column that contains 27 different batch values. I suspect these correspond to 27 different datasets, as mentioned in the manuscript.

  2. Could you kindly confirm whether these batch values correspond to distinct datasets? If possible, could you provide the dataset identifiers (e.g., GSE or EGAD numbers) associated with each batch?

Thanks for your time.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant