KinFin v0.7.9

• added new script src/exclude_sequences_from_blast.py

KinFin v0.7.8

• Catching error when proteins in clustering are part of proteomes not present in SpeciesClassification file

KinFin v0.7.7

• Fixed issue regarding commented out Species
• Added isoform_finder.py (a script for inferring non-longest-isoforms from GFF files)

KinFin v0.7.6

Features

• Now compatible with input files with SpeciesIDs that are commented out
  • SpeciesIDs.txt can have comments
  • Attribute file can have comments
  • SequenceIDs of unknown SpeciesIDs are ignored
  • Domains of proteins of unknown SpeciesIDs are ignored

KinFin v0.7.5

Feature

• Added "N/A" to column "proteomes_without_domain" in cluster_metrics_domains_detailed if domain is present in all proteomes

KinFin v0.7.4

Feature

• Added new column proteome_with_domain_fraction to domain description files

KinFin v0.7.3

Feature

• Default plot format is 'pdf'

KinFin v0.7.2

Features

• New output files with domain descriptions for Pfam, IPR and GO
• Necessary mapping files are fetched (internet connection required)
• Added "welcome screen"

KinFin v0.6.1

• Fixed bug related to cluster_metrics not being printed for ALOs

KinFin v0.6

• Fixed bug in Tree analysis
• Added feature for printing (fuzzy/true) 1to1-clusters for each ALO