From aa48966f567fb3d0db9c5a8e53683cb6029b8219 Mon Sep 17 00:00:00 2001 From: Michele Dolfi Date: Mon, 28 Nov 2022 15:54:38 +0100 Subject: [PATCH 1/2] chore: remove examples dependencies Signed-off-by: Michele Dolfi --- poetry.lock | 1480 ++++++++++++++++++++++-------------------------- pyproject.toml | 6 - 2 files changed, 678 insertions(+), 808 deletions(-) diff --git a/poetry.lock b/poetry.lock index 07a91b17..bfc1b0da 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,20 @@ +[[package]] +name = "anyio" +version = "3.6.2" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +category = "main" +optional = true +python-versions = ">=3.6.2" + +[package.dependencies] +idna = ">=2.8" +sniffio = ">=1.1" + +[package.extras] +doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"] +trio = ["trio (>=0.16,<0.22)"] + [[package]] name = "appdirs" version = "1.4.4" @@ -47,21 +64,23 @@ tests = ["pytest"] [[package]] name = "astroid" -version = "2.11.7" +version = "2.12.13" description = "An abstract syntax tree for Python with inference support." category = "dev" optional = false -python-versions = ">=3.6.2" +python-versions = ">=3.7.2" [package.dependencies] lazy-object-proxy = ">=1.4.0" -setuptools = ">=20.0" typing-extensions = {version = ">=3.10", markers = "python_version < \"3.10\""} -wrapt = ">=1.11,<2" +wrapt = [ + {version = ">=1.11,<2", markers = "python_version < \"3.11\""}, + {version = ">=1.14,<2", markers = "python_version >= \"3.11\""}, +] [[package]] name = "asttokens" -version = "2.0.8" +version = "2.1.0" description = "Annotate AST trees with source code positions" category = "main" optional = false @@ -73,14 +92,6 @@ six = "*" [package.extras] test = ["astroid (<=2.5.3)", "pytest"] -[[package]] -name = "atomicwrites" -version = "1.4.1" -description = "Atomic file writes." -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - [[package]] name = "attrs" version = "22.1.0" @@ -93,7 +104,7 @@ python-versions = ">=3.5" dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] +tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] [[package]] name = "backcall" @@ -120,11 +131,11 @@ lxml = ["lxml"] [[package]] name = "black" -version = "22.6.0" +version = "22.10.0" description = "The uncompromising code formatter." category = "dev" optional = false -python-versions = ">=3.6.2" +python-versions = ">=3.7" [package.dependencies] click = ">=8.0.0" @@ -194,7 +205,7 @@ optional = false python-versions = ">=3.6.0" [package.extras] -unicode_backport = ["unicodedata2"] +unicode-backport = ["unicodedata2"] [[package]] name = "click" @@ -220,15 +231,29 @@ click = "*" [[package]] name = "colorama" -version = "0.4.5" +version = "0.4.6" description = "Cross-platform colored terminal text." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" + +[[package]] +name = "comm" +version = "0.1.1" +description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." +category = "main" +optional = true +python-versions = ">=3.6" + +[package.dependencies] +traitlets = ">5.3" + +[package.extras] +test = ["pytest"] [[package]] name = "cryptography" -version = "38.0.1" +version = "38.0.4" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." category = "dev" optional = false @@ -271,18 +296,18 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "dill" -version = "0.3.5.1" +version = "0.3.6" description = "serialize all of python" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*" +python-versions = ">=3.7" [package.extras] graph = ["objgraph (>=1.7.2)"] [[package]] name = "distlib" -version = "0.3.5" +version = "0.3.6" description = "Distribution utilities" category = "dev" optional = false @@ -327,17 +352,31 @@ category = "main" optional = true python-versions = ">=3.6" +[[package]] +name = "exceptiongroup" +version = "1.0.4" +description = "Backport of PEP 654 (exception groups)" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.extras] +test = ["pytest (>=6)"] + [[package]] name = "executing" -version = "0.10.0" +version = "1.2.0" description = "Get the currently executing AST node of a frame, and other information" category = "main" optional = false python-versions = "*" +[package.extras] +tests = ["asttokens", "littleutils", "pytest", "rich"] + [[package]] name = "fastjsonschema" -version = "2.16.1" +version = "2.16.2" description = "Fastest Python implementation of JSON schema" category = "main" optional = true @@ -374,17 +413,17 @@ dev = ["flake8", "markdown", "twine", "wheel"] [[package]] name = "gitdb" -version = "4.0.9" +version = "4.0.10" description = "Git Object Database" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] smmap = ">=3.0.1,<6" [[package]] -name = "GitPython" +name = "gitpython" version = "3.1.29" description = "GitPython is a python library used to interact with Git repositories" category = "dev" @@ -396,18 +435,21 @@ gitdb = ">=4.0.1,<5" [[package]] name = "griffe" -version = "0.22.0" +version = "0.24.1" description = "Signatures for entire Python programs. Extract the structure, the frame, the skeleton of your project, to generate API documentation or find breaking changes in your API." category = "dev" optional = false python-versions = ">=3.7" +[package.dependencies] +colorama = ">=0.4" + [package.extras] async = ["aiofiles (>=0.7,<1.0)"] [[package]] name = "identify" -version = "2.5.3" +version = "2.5.9" description = "File identification library for Python" category = "dev" optional = false @@ -418,7 +460,7 @@ license = ["ukkonen"] [[package]] name = "idna" -version = "3.3" +version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" optional = false @@ -426,7 +468,7 @@ python-versions = ">=3.5" [[package]] name = "importlib-metadata" -version = "4.12.0" +version = "5.1.0" description = "Read metadata from Python packages" category = "main" optional = false @@ -436,13 +478,13 @@ python-versions = ">=3.7" zipp = ">=0.5" [package.extras] -docs = ["jaraco.packaging (>=9)", "rst.linker (>=1.9)", "sphinx"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] perf = ["ipython"] -testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] +testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] [[package]] name = "importlib-resources" -version = "5.9.0" +version = "5.10.0" description = "Read resources from Python packages" category = "main" optional = true @@ -452,8 +494,8 @@ python-versions = ">=3.7" zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] -docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx"] -testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [[package]] name = "iniconfig" @@ -473,14 +515,15 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.15.1" +version = "6.18.1" description = "IPython Kernel for Jupyter" category = "main" optional = true -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] appnope = {version = "*", markers = "platform_system == \"Darwin\""} +comm = ">=0.1" debugpy = ">=1.0" ipython = ">=7.23.1" jupyter-client = ">=6.1.12" @@ -493,11 +536,13 @@ tornado = ">=6.1" traitlets = ">=5.1.0" [package.extras] -test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=6.0)", "pytest-cov", "pytest-timeout"] +cov = ["coverage[toml]", "curio", "matplotlib", "pytest-cov", "trio"] +docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt"] +test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio", "pytest-cov", "pytest-timeout"] [[package]] name = "ipython" -version = "8.4.0" +version = "8.7.0" description = "IPython: Productive Interactive Computing" category = "main" optional = false @@ -512,16 +557,15 @@ jedi = ">=0.16" matplotlib-inline = "*" pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" -prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" +prompt-toolkit = ">=3.0.11,<3.1.0" pygments = ">=2.4.0" -setuptools = ">=18.5" stack-data = "*" traitlets = ">=5" [package.extras] -all = ["Sphinx (>=1.3)", "black", "curio", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "testpath", "trio"] +all = ["black", "curio", "docrepr", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.20)", "pandas", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"] black = ["black"] -doc = ["Sphinx (>=1.3)"] +doc = ["docrepr", "ipykernel", "matplotlib", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"] kernel = ["ipykernel"] nbconvert = ["nbconvert"] nbformat = ["nbformat"] @@ -529,7 +573,7 @@ notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] -test_extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"] +test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.20)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"] [[package]] name = "ipython-blocking" @@ -581,12 +625,12 @@ python-versions = ">=3.6.1,<4.0" [package.extras] colors = ["colorama (>=0.4.3,<0.5.0)"] -pipfile_deprecated_finder = ["pipreqs", "requirementslib"] +pipfile-deprecated-finder = ["pipreqs", "requirementslib"] plugins = ["setuptools"] -requirements_deprecated_finder = ["pip-api", "pipreqs"] +requirements-deprecated-finder = ["pip-api", "pipreqs"] [[package]] -name = "jaraco.classes" +name = "jaraco-classes" version = "3.2.3" description = "Utility functions for Python class constructs" category = "dev" @@ -602,7 +646,7 @@ testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-chec [[package]] name = "jedi" -version = "0.18.1" +version = "0.18.2" description = "An autocompletion tool for Python that can be used for text editors." category = "main" optional = false @@ -612,8 +656,9 @@ python-versions = ">=3.6" parso = ">=0.8.0,<0.9.0" [package.extras] +docs = ["Jinja2 (==2.11.3)", "MarkupSafe (==1.1.1)", "Pygments (==2.8.1)", "alabaster (==0.7.12)", "babel (==2.9.1)", "chardet (==4.0.0)", "commonmark (==0.8.1)", "docutils (==0.17.1)", "future (==0.18.2)", "idna (==2.10)", "imagesize (==1.2.0)", "mock (==1.0.1)", "packaging (==20.9)", "pyparsing (==2.4.7)", "pytz (==2021.1)", "readthedocs-sphinx-ext (==2.1.4)", "recommonmark (==0.5.0)", "requests (==2.25.1)", "six (==1.15.0)", "snowballstemmer (==2.1.0)", "sphinx (==1.8.5)", "sphinx-rtd-theme (==0.4.3)", "sphinxcontrib-serializinghtml (==1.1.4)", "sphinxcontrib-websupport (==1.2.4)", "urllib3 (==1.26.4)"] qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] -testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] +testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] [[package]] name = "jeepney" @@ -643,7 +688,7 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "jsonschema" -version = "4.14.0" +version = "4.17.1" description = "An implementation of JSON Schema validation for Python" category = "main" optional = true @@ -659,25 +704,9 @@ pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] -[[package]] -name = "jupyter" -version = "1.0.0" -description = "Jupyter metapackage. Install all the Jupyter components in one go." -category = "main" -optional = true -python-versions = "*" - -[package.dependencies] -ipykernel = "*" -ipywidgets = "*" -jupyter-console = "*" -nbconvert = "*" -notebook = "*" -qtconsole = "*" - [[package]] name = "jupyter-client" -version = "7.3.4" +version = "7.4.7" description = "Jupyter protocol implementation and client libraries" category = "main" optional = true @@ -689,45 +718,58 @@ jupyter-core = ">=4.9.2" nest-asyncio = ">=1.5.4" python-dateutil = ">=2.8.2" pyzmq = ">=23.0" -tornado = ">=6.0" +tornado = ">=6.2" traitlets = "*" [package.extras] doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] -test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] +test = ["codecov", "coverage", "ipykernel (>=6.12)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] [[package]] -name = "jupyter-console" -version = "6.4.4" -description = "Jupyter terminal console" +name = "jupyter-core" +version = "5.1.0" +description = "Jupyter core package. A base package on which Jupyter projects rely." category = "main" optional = true -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] -ipykernel = "*" -ipython = "*" -jupyter-client = ">=7.0.0" -prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" -pygments = "*" +platformdirs = ">=2.5" +pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} +traitlets = ">=5.3" [package.extras] -test = ["pexpect"] +docs = ["myst-parser", "sphinxcontrib-github-alt", "traitlets"] +test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] [[package]] -name = "jupyter-core" -version = "4.11.1" -description = "Jupyter core package. A base package on which Jupyter projects rely." +name = "jupyter-server" +version = "1.23.3" +description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." category = "main" optional = true python-versions = ">=3.7" [package.dependencies] -pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} -traitlets = "*" +anyio = ">=3.1.0,<4" +argon2-cffi = "*" +jinja2 = "*" +jupyter-client = ">=6.1.12" +jupyter-core = ">=4.7.0" +nbconvert = ">=6.4.4" +nbformat = ">=5.2.0" +packaging = "*" +prometheus-client = "*" +pywinpty = {version = "*", markers = "os_name == \"nt\""} +pyzmq = ">=17" +Send2Trash = "*" +terminado = ">=0.8.3" +tornado = ">=6.1.0" +traitlets = ">=5.1" +websocket-client = "*" [package.extras] -test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] +test = ["coverage", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-scripts", "pytest-cov", "pytest-mock", "pytest-timeout", "pytest-tornasync", "requests"] [[package]] name = "jupyterlab-pygments" @@ -747,44 +789,30 @@ python-versions = ">=3.6" [[package]] name = "keyring" -version = "23.9.3" +version = "23.11.0" description = "Store and access your passwords safely." category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""} +importlib-metadata = {version = ">=4.11.4", markers = "python_version < \"3.12\""} "jaraco.classes" = "*" jeepney = {version = ">=0.4.2", markers = "sys_platform == \"linux\""} pywin32-ctypes = {version = "<0.1.0 || >0.1.0,<0.1.1 || >0.1.1", markers = "sys_platform == \"win32\""} SecretStorage = {version = ">=3.2", markers = "sys_platform == \"linux\""} [package.extras] -docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [[package]] name = "lazy-object-proxy" -version = "1.7.1" +version = "1.8.0" description = "A fast and thorough lazy object proxy." category = "dev" optional = false -python-versions = ">=3.6" - -[[package]] -name = "lxml" -version = "4.9.1" -description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -category = "main" -optional = true -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" - -[package.extras] -cssselect = ["cssselect (>=0.7)"] -html5 = ["html5lib"] -htmlsoup = ["BeautifulSoup4"] -source = ["Cython (>=0.29.7)"] +python-versions = ">=3.7" [[package]] name = "markdown" @@ -845,26 +873,28 @@ python-versions = "*" [[package]] name = "mkdocs" -version = "1.3.1" +version = "1.4.2" description = "Project documentation with Markdown." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -click = ">=3.3" +click = ">=7.0" +colorama = {version = ">=0.4", markers = "platform_system == \"Windows\""} ghp-import = ">=1.0" -importlib-metadata = ">=4.3" -Jinja2 = ">=2.10.2" -Markdown = ">=3.2.1,<3.4" +importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""} +jinja2 = ">=2.11.1" +markdown = ">=3.2.1,<3.4" mergedeep = ">=1.3.4" packaging = ">=20.5" -PyYAML = ">=3.10" +pyyaml = ">=5.1" pyyaml-env-tag = ">=0.1" watchdog = ">=2.0" [package.extras] i18n = ["babel (>=2.9.0)"] +min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.3)", "jinja2 (==2.11.1)", "markdown (==3.2.1)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "packaging (==20.5)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "typing-extensions (==3.10)", "watchdog (==2.0)"] [[package]] name = "mkdocs-autorefs" @@ -880,7 +910,7 @@ mkdocs = ">=1.1" [[package]] name = "mkdocs-material" -version = "8.4.1" +version = "8.5.10" description = "Documentation that simply works" category = "dev" optional = false @@ -889,18 +919,19 @@ python-versions = ">=3.7" [package.dependencies] jinja2 = ">=3.0.2" markdown = ">=3.2" -mkdocs = ">=1.3.0" -mkdocs-material-extensions = ">=1.0.3" +mkdocs = ">=1.4.0" +mkdocs-material-extensions = ">=1.1" pygments = ">=2.12" pymdown-extensions = ">=9.4" +requests = ">=2.26" [[package]] name = "mkdocs-material-extensions" -version = "1.0.3" -description = "Extension pack for Python Markdown." +version = "1.1.1" +description = "Extension pack for Python Markdown and MkDocs Material." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "mkdocs-typer" @@ -938,14 +969,14 @@ python-legacy = ["mkdocstrings-python-legacy (>=0.2.1)"] [[package]] name = "mkdocstrings-python" -version = "0.7.1" +version = "0.8.2" description = "A Python handler for mkdocstrings." category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -griffe = ">=0.11.1" +griffe = ">=0.24" mkdocstrings = ">=0.19" [[package]] @@ -981,9 +1012,41 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "nbclassic" +version = "0.4.8" +description = "A web-based notebook environment for interactive computing" +category = "main" +optional = true +python-versions = ">=3.7" + +[package.dependencies] +argon2-cffi = "*" +ipykernel = "*" +ipython-genutils = "*" +jinja2 = "*" +jupyter-client = ">=6.1.1" +jupyter-core = ">=4.6.1" +jupyter-server = ">=1.8" +nbconvert = ">=5" +nbformat = "*" +nest-asyncio = ">=1.5" +notebook-shim = ">=0.1.0" +prometheus-client = "*" +pyzmq = ">=17" +Send2Trash = ">=1.8.0" +terminado = ">=0.8.3" +tornado = ">=6.1" +traitlets = ">=4.2.1" + +[package.extras] +docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +json-logging = ["json-logging"] +test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-playwright", "pytest-tornasync", "requests", "requests-unixsocket", "testpath"] + [[package]] name = "nbclient" -version = "0.6.7" +version = "0.7.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "main" optional = true @@ -1001,7 +1064,7 @@ test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets [[package]] name = "nbconvert" -version = "7.0.0" +version = "7.2.5" description = "Converting Jupyter Notebooks" category = "main" optional = true @@ -1015,7 +1078,6 @@ importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""} jinja2 = ">=3.0" jupyter-core = ">=4.7" jupyterlab-pygments = "*" -lxml = "*" markupsafe = ">=2.0" mistune = ">=2.0.3,<3" nbclient = ">=0.5.0" @@ -1027,8 +1089,8 @@ tinycss2 = "*" traitlets = ">=5.0" [package.extras] -all = ["ipykernel", "ipython", "ipywidgets (>=7)", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"] -docs = ["ipython", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"] +all = ["ipykernel", "ipython", "ipywidgets (>=7)", "myst-parser", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"] +docs = ["ipython", "myst-parser", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"] qtpdf = ["pyqtwebengine (>=5.15)"] qtpng = ["pyqtwebengine (>=5.15)"] serve = ["tornado (>=6.1)"] @@ -1037,7 +1099,7 @@ webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.4.0" +version = "5.7.0" description = "The Jupyter Notebook format" category = "main" optional = true @@ -1050,11 +1112,11 @@ jupyter-core = "*" traitlets = ">=5.1" [package.extras] -test = ["check-manifest", "pre-commit", "pytest", "testpath"] +test = ["check-manifest", "pep440", "pre-commit", "pytest", "testpath"] [[package]] name = "nest-asyncio" -version = "1.5.5" +version = "1.5.6" description = "Patch asyncio to allow nested event loops" category = "main" optional = true @@ -1073,7 +1135,7 @@ setuptools = "*" [[package]] name = "notebook" -version = "6.4.12" +version = "6.5.2" description = "A web-based notebook environment for interactive computing" category = "main" optional = true @@ -1086,6 +1148,7 @@ ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" +nbclassic = ">=0.4.7" nbconvert = ">=5" nbformat = "*" nest-asyncio = ">=1.5" @@ -1099,15 +1162,21 @@ traitlets = ">=4.2.1" [package.extras] docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] json-logging = ["json-logging"] -test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixsocket", "selenium", "testpath"] +test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixsocket", "selenium (==4.1.5)", "testpath"] [[package]] -name = "numpy" -version = "1.23.2" -description = "NumPy is the fundamental package for array computing with Python." +name = "notebook-shim" +version = "0.2.2" +description = "A shim layer for notebook traits and config" category = "main" optional = true -python-versions = ">=3.8" +python-versions = ">=3.7" + +[package.dependencies] +jupyter-server = ">=1.8,<3" + +[package.extras] +test = ["pytest", "pytest-console-scripts", "pytest-tornasync"] [[package]] name = "packaging" @@ -1120,27 +1189,6 @@ python-versions = ">=3.6" [package.dependencies] pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" -[[package]] -name = "pandas" -version = "1.4.3" -description = "Powerful data structures for data analysis, time series, and statistics" -category = "main" -optional = true -python-versions = ">=3.8" - -[package.dependencies] -numpy = [ - {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, - {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""}, - {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""}, - {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, -] -python-dateutil = ">=2.8.1" -pytz = ">=2020.1" - -[package.extras] -test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] - [[package]] name = "pandocfilters" version = "1.5.0" @@ -1163,11 +1211,11 @@ testing = ["docopt", "pytest (<6.0.0)"] [[package]] name = "pathspec" -version = "0.9.0" +version = "0.10.2" description = "Utility library for gitignore style pattern matching of file paths." category = "dev" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +python-versions = ">=3.7" [[package]] name = "pexpect" @@ -1209,15 +1257,15 @@ python-versions = ">=3.6" [[package]] name = "platformdirs" -version = "2.5.2" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" +version = "2.5.4" +description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +category = "main" optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx (>=4)", "sphinx-autodoc-typehints (>=1.12)"] -test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] +docs = ["furo (>=2022.9.29)", "proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.4)"] +test = ["appdirs (==1.4.4)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"] [[package]] name = "pluggy" @@ -1249,7 +1297,7 @@ virtualenv = ">=20.0.8" [[package]] name = "prometheus-client" -version = "0.14.1" +version = "0.15.0" description = "Python client for the Prometheus monitoring system." category = "main" optional = true @@ -1260,7 +1308,7 @@ twisted = ["twisted"] [[package]] name = "prompt-toolkit" -version = "3.0.30" +version = "3.0.33" description = "Library for building powerful interactive command lines in Python" category = "main" optional = false @@ -1271,7 +1319,7 @@ wcwidth = "*" [[package]] name = "psutil" -version = "5.9.1" +version = "5.9.4" description = "Cross-platform lib for process and system monitoring in Python." category = "main" optional = true @@ -1304,7 +1352,7 @@ name = "py" version = "1.11.0" description = "library with cross-python path, ini-parsing, io, code, log facilities" category = "main" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] @@ -1325,14 +1373,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pydantic" -version = "1.9.2" +version = "1.10.2" description = "Data validation and settings management using python type hints" category = "main" optional = false -python-versions = ">=3.6.1" +python-versions = ">=3.7" [package.dependencies] -typing-extensions = ">=3.7.4.3" +typing-extensions = ">=4.1.0" [package.extras] dotenv = ["python-dotenv (>=0.10.4)"] @@ -1351,14 +1399,14 @@ plugins = ["importlib-metadata"] [[package]] name = "pylint" -version = "2.14.5" +version = "2.15.6" description = "python code static checker" category = "dev" optional = false python-versions = ">=3.7.2" [package.dependencies] -astroid = ">=2.11.6,<=2.12.0-dev0" +astroid = ">=2.12.12,<=2.14.0-dev0" colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""} dill = ">=0.2" isort = ">=4.2.5,<6" @@ -1374,7 +1422,7 @@ testutils = ["gitpython (>3)"] [[package]] name = "pymdown-extensions" -version = "9.5" +version = "9.9" description = "Extension pack for Python Markdown." category = "dev" optional = false @@ -1396,7 +1444,7 @@ diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyrsistent" -version = "0.18.1" +version = "0.19.2" description = "Persistent/Functional/Immutable data structures" category = "main" optional = true @@ -1404,21 +1452,20 @@ python-versions = ">=3.7" [[package]] name = "pytest" -version = "7.1.2" +version = "7.2.0" description = "pytest: simple powerful testing with Python" category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} attrs = ">=19.2.0" colorama = {version = "*", markers = "sys_platform == \"win32\""} +exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" -py = ">=1.8.2" -tomli = ">=1.0.0" +tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] @@ -1436,7 +1483,7 @@ six = ">=1.5" [[package]] name = "python-gitlab" -version = "3.10.0" +version = "3.12.0" description = "Interact with GitLab API" category = "dev" optional = false @@ -1496,17 +1543,9 @@ docs = ["Jinja2 (==3.0.3)", "Sphinx (==1.3.6)"] mypy = ["mypy", "types-requests"] test = ["coverage (>=5,<6)", "mock (==1.3.0)", "pytest (>=5,<6)", "pytest-mock (>=2,<3)", "pytest-xdist (>=1,<2)", "responses (==0.13.3)"] -[[package]] -name = "pytz" -version = "2022.2.1" -description = "World timezone definitions, modern and historical" -category = "main" -optional = true -python-versions = "*" - [[package]] name = "pywin32" -version = "304" +version = "305" description = "Python for Window Extensions" category = "main" optional = true @@ -1522,7 +1561,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "2.0.7" +version = "2.0.9" description = "Pseudo terminal support for Windows from Python." category = "main" optional = true @@ -1549,7 +1588,7 @@ pyyaml = "*" [[package]] name = "pyzmq" -version = "23.2.1" +version = "24.0.1" description = "Python bindings for 0MQ" category = "main" optional = true @@ -1559,45 +1598,9 @@ python-versions = ">=3.6" cffi = {version = "*", markers = "implementation_name == \"pypy\""} py = {version = "*", markers = "implementation_name == \"pypy\""} -[[package]] -name = "qtconsole" -version = "5.3.1" -description = "Jupyter Qt console" -category = "main" -optional = true -python-versions = ">= 3.7" - -[package.dependencies] -ipykernel = ">=4.1" -ipython-genutils = "*" -jupyter-client = ">=4.1" -jupyter-core = "*" -pygments = "*" -pyzmq = ">=17.1" -qtpy = ">=2.0.1" -traitlets = "<5.2.1 || >5.2.1,<5.2.2 || >5.2.2" - -[package.extras] -doc = ["Sphinx (>=1.3)"] -test = ["flaky", "pytest", "pytest-qt"] - -[[package]] -name = "qtpy" -version = "2.2.0" -description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." -category = "main" -optional = true -python-versions = ">=3.7" - -[package.dependencies] -packaging = "*" - -[package.extras] -test = ["pytest (>=6,!=7.0.0,!=7.0.1)", "pytest-cov (>=3.0.0)", "pytest-qt"] - [[package]] name = "readme-renderer" -version = "37.2" +version = "37.3" description = "readme_renderer is a library for rendering \"readme\" descriptions for Warehouse" category = "dev" optional = false @@ -1627,11 +1630,11 @@ urllib3 = ">=1.21.1,<1.27" [package.extras] socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "requests-toolbelt" -version = "0.10.0" +version = "0.10.1" description = "A utility belt for advanced users of python-requests" category = "dev" optional = false @@ -1663,7 +1666,7 @@ python-versions = ">=3.6,<4" pyasn1 = ">=0.1.3" [[package]] -name = "SecretStorage" +name = "secretstorage" version = "3.3.3" description = "Python bindings to FreeDesktop.org Secret Service API" category = "dev" @@ -1697,15 +1700,15 @@ win32 = ["pywin32"] [[package]] name = "setuptools" -version = "65.5.0" +version = "65.6.3" description = "Easily download, build, install, upgrade, and uninstall Python packages" -category = "main" +category = "dev" optional = false python-versions = ">=3.7" [package.extras] docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] -testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy 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"ipython-blocking", "ipywidgets"] [tool.poetry.group.dev.dependencies] black = {extras = ["jupyter"], version = "^22.1.0"} From ebe635ec4d4c2ec617ce6499a4893bc901af5d1e Mon Sep 17 00:00:00 2001 From: Michele Dolfi Date: Mon, 28 Nov 2022 19:03:11 +0100 Subject: [PATCH 2/2] Link to examples repo and use card grids in gallery Signed-off-by: Michele Dolfi --- docs/css/custom.css | 205 ++++++++++++++++++++++++++++++++++++++++-- docs/gallery/index.md | 70 ++++++++++++--- examples/README.md | 10 +++ 3 files changed, 265 insertions(+), 20 deletions(-) diff --git a/docs/css/custom.css b/docs/css/custom.css index a6f39c96..dee309ff 100644 --- a/docs/css/custom.css +++ b/docs/css/custom.css @@ -1,10 +1,197 @@ .termynal-comment { - color: #4a968f; - font-style: italic; - display: block; - } - - .termy [data-termynal] { - white-space: pre-wrap; - } - \ No newline at end of file + color: #4a968f; + font-style: italic; + display: block; +} + +.termy [data-termynal] { + white-space: pre-wrap; +} + +.md-typeset .grid { + grid-gap: .4rem; + display: grid; + grid-template-columns: repeat(auto-fit, minmax(16rem, 1fr)); + margin: 1em 0 +} + +.md-typeset .grid.cards>:-webkit-any(ul, + ol) { + display: contents +} + +.md-typeset .grid.cards>:-moz-any(ul, + ol) { + display: contents +} + +.md-typeset .grid.cards>:is(ul, + ol) { + display: contents +} + +.md-typeset .grid.cards>:-webkit-any(ul, + ol)>li, +.md-typeset .grid>.card { + border: .05rem solid var(--md-default-fg-color--lightest); + border-radius: .1rem; + display: block; + margin: 0; + padding: .8rem; + -webkit-transition: border .25s, box-shadow .25s; + transition: border .25s, box-shadow .25s +} + +.md-typeset .grid.cards>:-moz-any(ul, + ol)>li, +.md-typeset .grid>.card { + border: .05rem solid var(--md-default-fg-color--lightest); + border-radius: .1rem; + display: block; + margin: 0; + padding: .8rem; + -moz-transition: border .25s, box-shadow .25s; + transition: border .25s, box-shadow .25s +} + +.md-typeset .grid.cards>:is(ul, + ol)>li, +.md-typeset .grid>.card { + border: .05rem solid var(--md-default-fg-color--lightest); + border-radius: .1rem; + display: block; + margin: 0; + padding: .8rem; + transition: border .25s, box-shadow .25s +} + +.md-typeset .grid.cards>:-webkit-any(ul, + ol)>li:-webkit-any(:focus-within, + :hover), +.md-typeset .grid>.card:-webkit-any(:focus-within, + :hover) { + border-color: #0000; + box-shadow: var(--md-shadow-z2) +} + +.md-typeset .grid.cards>:-moz-any(ul, + ol)>li:-moz-any(:focus-within, + :hover), +.md-typeset .grid>.card:-moz-any(:focus-within, + :hover) { + border-color: #0000; + box-shadow: var(--md-shadow-z2) +} + +.md-typeset .grid.cards>:is(ul, + ol)>li:is(:focus-within, + :hover), +.md-typeset .grid>.card:is(:focus-within, + :hover) { + border-color: #0000; + box-shadow: var(--md-shadow-z2) +} + +.md-typeset .grid.cards>:-webkit-any(ul, + ol)>li>hr, +.md-typeset .grid>.card>hr { + margin-bottom: 1em; + margin-top: 1em +} + +.md-typeset 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margin-top: 0 +} \ No newline at end of file diff --git a/docs/gallery/index.md b/docs/gallery/index.md index dbba85f8..3af156a8 100644 --- a/docs/gallery/index.md +++ b/docs/gallery/index.md @@ -1,23 +1,71 @@ # Gallery -*Examples of complete analysis and usages* +*Showcase some common usage of Deep Search for **Document conversion** as well as **Data and Knowledge exploration**.* + Examples are usually demonstrated as Jupyter notebooks which are listed in the [examples](https://github.com/DS4SD/deepsearch-toolkit/tree/main/examples) folder. -[To the examples :octicons-link-external-16:](https://github.com/DS4SD/deepsearch-toolkit/tree/main/examples){ .md-button .md-button--primary } +[To the examples :octicons-link-external-16:](https://github.com/DS4SD/deepsearch-examples){ .md-button .md-button--primary } + + +## Examples + +
+ +- __Convert documents quick start__ + + --- + + +
+ + Full example on programmatic document conversion + + [:octicons-arrow-right-24: Try it out](https://github.com/DS4SD/deepsearch-examples/tree/main/examples/document_conversion_quick_start) + +- __Visualize bounding boxes__ + + --- + + +
+ + Visualize the bbox of the text elements + + [:octicons-arrow-right-24: Try it out](https://github.com/DS4SD/deepsearch-examples/tree/main/examples/document_conversion_visualize_bbox) + +- __Extract figures from documents__ + + --- + + +
+ + Given a PDF file, extract the figures + + [:octicons-arrow-right-24: Try it out](https://github.com/DS4SD/deepsearch-examples/tree/main/examples/document_conversion_extract_figures) + +- __Extract tables__ + + --- + + +
+ + Given a PDF file, extract the tables + + [:octicons-arrow-right-24: Try it out](https://github.com/DS4SD/deepsearch-examples/tree/main/examples/document_conversion_extract_tables) +- __Data query quick start__ -!!! tip "Dependencies" + --- - Running the examples requires additional dependencies such as [jupyter/notebook](https://github.com/jupyter/notebook) and [pandas](https://pandas.pydata.org/). - These are easily installed with the `examples` extra dependency. + +
-
+ Example listing data collections, making search in one and more document collections, using source for projection - ```console - $ pip install deepsearch-toolkit[examples] + [:octicons-arrow-right-24: Try it out](https://github.com/DS4SD/deepsearch-examples/tree/main/examples/data_query_quick_start) - ---> 100% - ``` +
-
diff --git a/examples/README.md b/examples/README.md index 65f9b58b..28ee34ea 100644 --- a/examples/README.md +++ b/examples/README.md @@ -1,5 +1,15 @@ # Deep Search examples +Examples are now available in a dedicated gallery. + +:point_right: [https://github.com/DS4SD/deepsearch-examples](https://github.com/DS4SD/deepsearch-examples) + + +--- + +> This section is deprecated + + ## Install The examples notebooks contained in this folder require additional dependencies for being executed.