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<!DOCTYPE HTML>
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<html>
<head>
<title>Danko Lab</title>
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<h1><a href="#">Danko Lab</a></h1>
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<li><a href="index.html">Homepage</a></li>
<li><a href="Research.html">Research</a></li>
<li class="active"><a href="Team.html">Team</a></li>
<li><a href="Publications.html">Publications</a></li>
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<li><a href="Contact.html">Find Us</a></li>
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<div class="row">
<div class="4u">
<a href="#" class="image team"><img src="images/Charles.jpg" alt="" /></a>
</div>
<div class="8u">
<h2>Charles Danko</h2>
<p>Associate Professor</p>
<p>Charles is an assistant professor at the Baker Institute and the College of Veterinary Medicine, Cornell University. His research is focused on understanding gene regulation using methods from molecular biology and genetics, computer science, statistics, and machine learning. Learn about active research projects in the <a href="Research.html">Research page</a>.</p>
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<a href="https://genomic.social/@charlesdanko" class="twitter-follow-button"><img src="images/Mastodon-18-15.png" alt="" />@charlesdanko@genomic.social</a>
<a href="https://twitter.com/charlesdanko" class="twitter-follow-button"><img src="images/twitter_white.png"/>@charlesdanko</a>
<a href="files/Danko-CV.pdf">CV</a>
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<a href="#" class="image team"><img src="images/Ed.jpg" alt="" /></a>
<BR>
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<h2>Ed Rice</h2>
<p>Laboratory Manager</p>
<p>Ed is a professional laboratory manager, with over 20 years of molecular biology experience. As the lead bench scientist, Ed has his hands in virtually every project in the Danko lab. He has a particular scientific interest in understanding the molecular pathways underlying autoimmune disorders.</p>
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<a href="#" class="image team"><img src="images/Gilad_IMG-20190401-WA0003.jpg" alt="" /></a>
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<h2>Gilad Barshad</h2>
<p>Postdoctroal Associate</p>
<p>Gilad received his PhD from Ben Gurion University, Beer-Sheva, Israel in 2019. During his PhD Gilad studied the mitochondrial-nuclear co-regulation of gene expression. Looking through an evolutionary lens, Gilad now hopes to shed new light on the relationship between genomic architecture and transcriptional regulation. </p>
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<a href="#" class="image team"><img src="images/BlaineHarlan.png" alt="" /></a>
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<h2>Blaine Harlan</h2>
<p>Postdoctroal Associate</p>
<p>Blaine earned her PhD from Cornell University performing scATAC-seq data collection, analysis, and technology development. Blaine's interest is currently in tech development of single cell genomic assays and applications in cancer and germ cell development. </p>
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<a href="#" class="image team"><img src="images/jlama.jpeg" alt="" /></a>
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<h2>Jyoti Lama</h2>
<p>Postdoctroal Associate</p>
<p>Jyoti completed her PhD from University of Houston studying host tolerance to transposable elements. Jyoti's focus in the Danko and Cohen labs is to understand how changes in transcription and chromatin influence germ cell development. </p>
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<a href="#" class="image team"><img src="images/Jon.DSC_0443.JPG" alt="" /></a>
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<h2>Jon Villanueva</h2>
<p>Biomedical and Biological Sciences Graduate Student</p>
<p>Jonathan Villanueva is a graduate student in the Biomedical and Biological Sciences program at Cornell. He is interested in utilizing dry and wet lab techniques to identify how specific mutational combinations alter the gene regulatory mechanisms (enhancers and miRNAs) that drive colon cancer development.</p>
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<a href="#" class="image team"><img src="images/A.jpg" alt="" /></a>
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<h2>Alexandra Chivu</h2>
<p>GG&D Graduate Student</p>
<p>Alex worked at the Genome Institute of Singapore (GIS) & Medical Research Council (MRC), London studying transcription bursts and epigenetic regulation in cancer and immunity. Currently Alex is interested in understanding the impact of chromatin architecture on transcriptional regulation, as well as developing new RNA-based technologies. </p>
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<a href="#" class="image team"><img src="images/AdamHe.png" alt="" /></a>
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<h2>Adam He</h2>
<p>Computational Biology Graduate Student</p>
<p>Adam is a graduate student in the Computational Biology program at Cornell. He is interested in both the application of machine learning methods to understanding transcriptional regulation and, more broadly, the role that transcriptional regulators play in development and evolution. </p>
</div>
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<BR><BR>
<header><span class="subsectit">Lab Alumni</span></header>
<BR><BR>
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<a href="#" class="image team"><img src="images/zhongwang_2014.jpg" alt="" /></a>
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<h2>Zhong Wang</h2>
<p>Programer, Research Associate </p>
<p>Zhong Wang arrived at Cornell University with 6 years of experience in Statistical Genetics and Biostatistics. He conducted postdoctoral training at Penn State College of Medicine and Yale School of Public Health, where he worked in the areas of statistical modeling and software development. <BR><BR>
Current position: Professor, Dalian University of Technology, China<BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Wang+Z%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<a href="#" class="image team"><img src="images/Tinyi.jpg" alt="" /></a>
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<h2>Tinyi Chu</h2>
<p>Croucher Foundation Graduate Fellow</p>
<p>Tinyi is a graduate student in the Computational Biology program at Cornell and a scholar of the <a href="http://scholars.croucher.org.hk/scholars/tinyi-chu">Croucher Foundation</a>. He is actively working on developing bioinformatic tools for analyzing PRO-seq data, and is broadly interested in understanding how the rewiring of transcriptional regulatory networks plays a role in oncogenesis.<BR><BR>
Current position: Postdoc (Dana Pe'er), Memorial Sloan Kettering Cancer Center, New York<BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Chu+T%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<a href="#" class="image team"><img src="images/Mridu.JPG" alt="" /></a>
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<h2>Mridusmita Saikia</h2>
<p>Postdoctroal Associate</p>
<p>A biochemist by training, Mridu received her PhD from University of Chicago in 2009, where she studied the role of posttranscriptional modifications present in cellular RNA. During her postdoctoral training she continued to study the non-coding RNAs, and their function in gene expression control, especially in the context of human diseases. Mridu is now making her debut into single cell genomics, her goal is to establish a single cell RNA sequencing technology, and adapt that technology to study canine immune cells. </p>
Current position: Lecturer, Biomedical Engineering, Cornell University<BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Saikia+M%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<a href="#" class="image team"><img src="images/Lauren.jpg" alt="" /></a>
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<h2>Lauren Choate</h2>
<p>GG&D Graduate Student</p>
<p>Lauren is a graduate student in the Genetics, Genomics, and Development program at Cornell. She is interested in understanding the role of disease risk alleles on transcriptional regulation in autoimmunity using computational and wet lab techniques.</p>
Current position: Mayo Clinic Laboratory Genetics and Genomics Fellow<BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Choate+LA%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<a href="#" class="image team"><img src="images/Paul.Munn.roto_tiller.jpg" alt="" /></a>
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<h2>Paul Munn</h2>
<p>Computational Biology Graduate Student</p>
<p>Paul is a graduate student in the Computational Biology program at Cornell. He is interested in both developing machine learning techniques to aid in the identification of transcription unit boundaries, and in improving our understanding of chromatin structure and how it affects gene regulation.</p>
Current position: Computational Biologist, TREx core, Cornell University<BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Munn+PR%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<a href="#" class="image team"><img src="images/JJL-IMG.png" alt="" /></a>
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<h2>James Lewis</h2>
<p>Postdoctroal Associate</p>
<p>James received his postdoc from Bob Reed at Cornell. James is interested in understanding the molecular basis of evolutionary adaptation, especially for traits driven by cis-regulatory changes. </p>
Current position: <a title="[Lewis Lab]" href=https://jameslewislab.com/>Assistant Professor, Clemson University</a><BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Lewis+JJ%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<a href="#" class="image team"><img src="images/Shao-Pei_Chou.JPG" alt="" /></a>
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<h2>Shao-Pei Chou</h2>
<p>GG&D Graduate Student</p>
<p>Shao-Pei is a graduate student in the Genetics, Genomics, and Development program at Cornell. She likes to develop new computational methods that can better tackle the problems and provide a different perspectives to examine the biological data. Here is a method she developed recently: <a href=": https://www.biorxiv.org/content/early/2018/08/10/389262">AlleleHMM</a>. Her current project is to identify genomic factors that play a role in transcription regulation using allele-specific analysis.</p>
Current position: Computational Biologist, Ginkgo Bioworks<BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Chou+SP%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<a href="#" class="image team"><img src="images/Adriana-Wide.jpg" alt="" /></a>
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<h2>Adriana Alexander</h2>
<p>Biomedical and Biological Sciences Graduate Student</p>
<p>Adriana is a graduate student in the Biological and Biomedical Sciences Program at Cornell. She is interested in understanding the mechanisms controlling transcriptional inactivation during spermatogenesis using a combination of wet lab and computational tools.</p>
Current position: Postdoctoral Associate (Humphrey Yao), NIH<BR>
<a title="[PubMed]" href=https://pubmed.ncbi.nlm.nih.gov/?term=%22danko+cg%22%5Bau%5D+%22Alexander+AK%22%5Bau%5D&sort=date>Danko lab publications.</a></p>
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<section>
<h2>Danko Lab</h2>
<ul class="contact">
<li>
<span class="mail">E-Mail</span>
<span>
<script type="text/javascript" language="Javascript">// <![CDATA[Hide script from non-javascript-enabled browsers
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<span class="mail">Social</span>
<a href="https://genomic.social/@charlesdanko"><img src="images/Mastodon-24-24.png" alt="" /></a>
<a href="https://twitter.com/charlesdanko"><img src="images/twitter.png" alt="" /></a>
<a href="https://github.com/danko-lab"><img src="images/github.png" alt="" /></a>
</li>
<li>
<span class="address">Address</span>
<span>
The Baker Institute for Animal Health<br />
College of Veterinary Medicine <br />
Cornell University <br />
Hungerford Hill Road<br />
Ithaca, NY 14853
</span>
</li>
</ul>
</section>
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<div class="4u">
<section>
<h2>Cornell University</h2>
<ul class="default">
<li><a href="https://www2.vet.cornell.edu/departments-centers-and-institutes/baker-institute">The Baker Institute</a></li>
<li><a href="http://www.vet.cornell.edu/biosci/">Department of Biomedical Sciences</a></li>
<li><a href="http://www.vet.cornell.edu/">College of Veterinary Medicine</a></li>
<li><a href="http://www.cb.cornell.edu/">Computational Biology Graduate Program</a></li>
<li><a href="http://www.cornell.edu">Cornell University</a></li>
</ul>
</section>
</div>
<div class="4u">
<section>
<h2>Join the lab!</h2>
<ul class="contact">
<li>
<span>We are considering applications from exceptionally talented scientists!</span>
</li>
<li>
<span class="mail">Postdocs:</span>
<span>E-mail a 1 page cover letter, a curriculum vitae, and 3 letters of reference to Charles Danko.</span>
</li>
<li>
<span class="mail">Students:</span>
<span>Apply through the graduate fields of <a href="http://www.cb.cornell.edu/">Computational Biology</a> or <a href="http://www.gendev.cornell.edu/">Genetics, Genomics & Development</a>.</span>
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