diff --git a/news/index.html b/news/index.html index 14e2440..068bf01 100644 --- a/news/index.html +++ b/news/index.html @@ -61,6 +61,8 @@
read_omim()
now additionally parses official API-key requiring phenotypicSeries.txt downloads and may be able to handle additional API-key requiring downloads.plot_citedby(): * _[BREAKING CHANGE]_
color_setargument now requires names and one color for each of the 7 possible publication types when specifying colors manually. *
retracted` argument added to specify how retracted articles should be managed.plot_citedby(
data_file = "data/citedby/DO_citedby.csv",
out_dir = "graphics/website",
- color_set = c("#C45055", "#934FBB", "#95B1BB", "#83C85F", "#B9964B", "#4C3E45"),
+ color_set = c(Article = "#4C3E45", `Clinical Trial` = "#B9964B", Book = "#83C85F",
+ Conference = "#95B1BB", Review = "#934FBB", Other = "#C45055", Retracted = "#000000"),
+ retracted = "warn",
w = 6,
h = 3.15
)
A named set of 7 colors, one for each of +the possible publication types (see Colors section) or the +prefix of the color set to use from DO_colors, as a character vector.
How to handle retracted publications, as a string. +One of:
"warn" (default) to drop them with a warning.
"include" to display them in the plot in their own category.
"other" to include them in the "Other" category.
scripts/citedby_full_procedure.R
.
If specifying a color set manually, one color should be included for each of +the following publication types: "Article", "Book", "Clinical Trial", +"Conference", "Review", "Other", "Retracted". "Other" serves as a catch all +category (generally a small subset of otherwise uncategorized publications).
+Sets available in DO_colors include: "sat" (saturated), "accent1", +"accent2", and "orange". The default and light versions of the specified +color set will be used to generate a gradient.
+