tcrop_config.module

<?php

/**
 * Contains generic functions for this module.
 */

/**
 *
 */
function tcrop_configure_get_modules($include_prereqs = FALSE) {
	$module_prereqs = [
		'libraries',
		'advanced_help', 'ctools date', 'dragndrop_upload', 'ds', 'entity',
		'field_formatter_class', 'field_formatter_settings',
		'field_group', 'field_group_table', 'jquery_update', 'link', 'maillog',
		'panels', 'queue_ui', 'redirect', 'services', 'ultimate_cron', 'views', 'webform',
		'tripal', 'tripal_chado', 'tripal_ws', 'tripal_ds',
	];
	$modules = [
		'chado_custom_search', 'trpfancy_fields', 'tripald3', 'trpdownload_api',
		'analyzedphenotypes', 'divseek_search', 'nd_genotypes', 'tripal_elasticsearch',
		'tripal_galaxy', 'tripal_jbrowse_page', 'tripal_jbrowse_mgmt',
		'tripal_qtl', 'vcf_filter', 'tripal_germplasm_importer', 'tripal_map'
	];

	if ($include_prereqs) {
		return array_merge($module_prereqs, $modules);
	}
	else {
		return $modules;
	}
}

/**
 * Returns the Tripal Pane categories for Germplasm Tripal Content Types.
 */
function tcrop_config_get_field_categories_germplasm() {
	$categories = [];

	$categories['hidden'] = [
		'name' => 'Hidden',
		'display' => 'disabled',
		'fields' => [
			'rdfs__type',
			'local__is_obsolete',
		],
	];

	$categories['names'] = [
		'name' => 'Accessions',
		'display' => 'right',
		'fields' => [
			'obi__organism',
			'schema__name',
			'data__identifier',
			'data__accession',
		],
	];

	$categories['passport'] = [
		'name' => 'Passport Data',
		'display' => 'right',
		'fields' => [
			'schema__description',
			'sio__annotation',
			'sbo__database_cross_reference',
		],
	];

	$categories['phenotype_summary'] = [
		'name' => 'Phenotypic Data Summary',
		'display' => 'right',
		'fields' => [
			'local__number_of_traits',
			'local__number_of_experiments',
			'local__number_of_locations',
			'local__number_of_years',
		],
	];

	$categories['phenotypes'] = [
		'name' => 'Phenotypic Data',
		'display' => 'right',
		'fields' => [
			'local__magnitude_of_phenotypes',
			'hp__phenotypic_variability',
			'local__child_studies',

		],
	];

	$categories['genotypes'] = [
		'name' => 'Genotypic Data',
		'display' => 'right',
		'fields' => [
			'local__stock_quick_filter',
			'local__germ_marker_summary',
		],
	];

	$categories['relationships'] = [
		'name' => 'Related Germplasm',
		'display' => 'right',
		'fields' => [
			'sbo__relationship',
		],
	];

	$categories['publications'] = [
		'name' => 'Associated Publications',
		'display' => 'right',
		'fields' => [
			'schema__publication',
		],
	];

	return $categories;
}