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crickomero-202111207.md

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OMERO @Crick (kenneth.ho[at]crick.ac.uk)

Date: 7 Dec 2021

  • Crick's OMERO
    • Crick has some 120 groups and some 1500 research staffs in a single site
    • OMERO Plus from Glencoe
    • 2 instances (1 production, 1 testing) * VM: 12 cores, 64GB ram, 120TB quota.
    • Separate configurations!!! (Don't do that!)
    • Not Ansible (work in progress)
    • No high availability (work in progress)

  • Uses Single-Sign-On (SSO)
    • a pain to register new users
    • But easier to manage when people leave.
  • Use network files (Active Directory)
    • Recommend In-place import for our users
    • But no auto-import yet (work in progress)
    • a pain to setup in-place import
  • External access URL for collaborations
  • No Public User yet (i.e. no public website)
  • AI/ML created pipelines for OMERO

Current challenges

  • QuPath ROI write back - SSL certificate probl.
  • Ansible/high availability/more instances for dev
  • Trouble using "omero duplicate" to external shared group when images are linked.
  • Reading in sparse wells
  • Users want Maximum Intensity Projection
  • Transfer images between instances
  • Commissioned Tape Backup option (Glencoe)