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Gruntfile.js
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/*global module:false*/
module.exports = function (grunt) {
var date = '<%= grunt.template.today("yyyymmddHH") %>';
require('time-grunt')(grunt);
var envTarget = grunt.option('env') || 'prod';
// Project configuration.
grunt.initConfig({
hub: {
genomeViewer: {
src: ['lib/jsorolla/Gruntfile-genome-viewer.js'],
tasks: ['default']
}
},
// Metadata.
meta: {
version: {
eva: '4.4.17'
},
submissionTemplate: {
version: 'V1.1.5'
}
},
build: {
dir: 'build/<%= meta.version.eva %>-' + envTarget
},
serve: {
options: {
port: 9000
}
},
bannereva: '/*\n'+
' *\n'+
' * European Variation Archive (EVA) - Open-access database of all types of genetic\n'+
' * variation data from all species\n'+
' *\n'+
' * Copyright 2014-'+new Date().getFullYear()+' EMBL - European Bioinformatics Institute\n'+
' *\n'+
' * Licensed under the Apache License, Version 2.0 (the "License");\n'+
' * you may not use this file except in compliance with the License.\n'+
' * You may obtain a copy of the License at\n'+
' *\n'+
' * http://www.apache.org/licenses/LICENSE-2.0\n'+
' *\n'+
' * Unless required by applicable law or agreed to in writing, software\n'+
' * distributed under the License is distributed on an "AS IS" BASIS,\n'+
' * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n'+
' * See the License for the specific language governing permissions and\n'+
' * limitations under the License.\n'+
' *\n'+
' */\n\n',
// Task configuration.
config: {
dev: {
options: {
variables: {
'DBSNP_HOST': 'wwwint.ebi.ac.uk/dbsnp/webservices/rest',
'DBSNP_VERSION': 'v1',
'DGVA_HOST': 'wwwint.ebi.ac.uk/dgva/webservices/rest',
'DGVA_VERSION': 'v1',
'EVA_HOST': 'wwwint.ebi.ac.uk/eva/webservices/rest',
'EVA_RELEASE_HOST' : "wwwint.ebi.ac.uk/eva/webservices/release",
'EVA_ACCESSIONING_HOST': 'wwwint.ebi.ac.uk/eva/webservices/identifiers',
'EVA_VCF_DUMPER_HOST': 'wwwint.ebi.ac.uk/eva/webservices/vcf-dumper',
'EVA_VERSION': 'v1',
'EVA_STAT_VERSION': 'v2'
}
}
},
staging: {
options: {
variables: {
'DBSNP_HOST': 'wwwdev.ebi.ac.uk/dbsnp/webservices/rest',
'DBSNP_VERSION': 'v1',
'DGVA_HOST': 'wwwdev.ebi.ac.uk/dgva/webservices/rest',
'DGVA_VERSION': 'v1',
'EVA_HOST': 'wwwdev.ebi.ac.uk/eva/webservices/rest',
'EVA_RELEASE_HOST' : "wwwdev.ebi.ac.uk/eva/webservices/release",
'EVA_ACCESSIONING_HOST': 'wwwdev.ebi.ac.uk/eva/webservices/identifiers',
'EVA_VCF_DUMPER_HOST': 'wwwdev.ebi.ac.uk/eva/webservices/vcf-dumper',
'EVA_VERSION': 'v1',
'EVA_STAT_VERSION': 'v2'
}
}
},
prod: {
options: {
variables: {
'DBSNP_HOST': 'www.ebi.ac.uk/dbsnp/webservices/rest',
'DBSNP_VERSION': 'v1',
'DGVA_HOST': 'www.ebi.ac.uk/dgva/webservices/rest',
'DGVA_VERSION': 'v1',
'EVA_HOST': 'www.ebi.ac.uk/eva/webservices/rest',
'EVA_RELEASE_HOST' : "www.ebi.ac.uk/eva/webservices/release",
'EVA_ACCESSIONING_HOST': 'www.ebi.ac.uk/eva/webservices/identifiers',
'EVA_VCF_DUMPER_HOST': 'www.ebi.ac.uk/eva/webservices/vcf-dumper',
'EVA_VERSION': 'v1',
'EVA_STAT_VERSION': 'v2'
}
}
}
},
replace: {
eva_manager: {
options: {
patterns: [
{
match: 'DBSNP_HOST',
replacement: '<%= grunt.config.get("DBSNP_HOST") %>'
},
{
match: 'DBSNP_VERSION',
replacement: '<%= grunt.config.get("DBSNP_VERSION") %>'
},
{
match: 'DGVA_HOST',
replacement: '<%= grunt.config.get("DGVA_HOST") %>'
},
{
match: 'DGVA_VERSION',
replacement: '<%= grunt.config.get("DGVA_VERSION") %>'
},
{
match: 'EVA_HOST',
replacement: '<%= grunt.config.get("EVA_HOST") %>'
},
{
match: 'EVA_RELEASE_HOST',
replacement: '<%= grunt.config.get("EVA_RELEASE_HOST") %>'
},
{
match: 'EVA_ACCESSIONING_HOST',
replacement: '<%= grunt.config.get("EVA_ACCESSIONING_HOST") %>'
},
{
match: 'EVA_VCF_DUMPER_HOST',
replacement: '<%= grunt.config.get("EVA_VCF_DUMPER_HOST") %>'
},
{
match: 'EVA_VERSION',
replacement: '<%= grunt.config.get("EVA_VERSION") %>'
},
{
match: 'EVA_STAT_VERSION',
replacement: '<%= grunt.config.get("EVA_STAT_VERSION") %>'
}
]
},
src: 'src/js/eva-manager-config.js',
dest: 'src/js/eva-manager.js'
},
acceptance_test: {
options: {
patterns: [
{
match: 'BASE_URL',
replacement: 'http://localhost:<%= serve.options.port %>/<%= build.dir %>/index.html'
}
]
},
src: 'tests/acceptance/config-manager.js',
dest: 'tests/acceptance/config.js'
},
html: {
options: {
patterns: [
{
match: /\.\.\//g,
replacement: function () {
return ''; // replaces "foo" to "bar"
}
},
{
match: /METADATA_TEMPLATE_VERSION/g,
replacement: '<%= meta.submissionTemplate.version %>'
}
]
},
files: [
{expand: true, flatten: true, src: ['<%= build.dir %>/index.html'], dest: '<%= build.dir %>'}
]
}
},
concat: {
eva: {
options: {
banner: '<%= bannereva %>',
stripBanners: true
},
src: [
/** eva app js **/
'src/js/eva-manager.js',
'src/js/eva-annotation-model.js',
'src/js/eva-config.js',
'src/js/eva-menu.js',
'src/js/eva-adapter.js',
'src/js/variant-widget/eva-variant-widget-panel.js',
'src/js/variant-widget/eva-variant-widget.js',
'src/js/variant-widget/eva-variant-browser-grid.js',
'src/js/variant-widget/eva-variant-files-panel.js',
'src/js/variant-widget/eva-variant-genotype-grid-panel.js',
'src/js/variant-widget/eva-variant-population-stats-panel.js',
'src/js/variant-widget/eva-variant-annotation-panel.js',
'src/js/variant-widget/filters/eva-form-panel.js',
'src/js/variant-widget/filters/eva-species-filter-form-panel.js',
'src/js/variant-widget/filters/eva-study-filter-form-panel.js',
'src/js/variant-widget/filters/eva-position-filter-form-panel.js',
'src/js/variant-widget/filters/eva-population-frequency-filter-form-panel.js',
'src/js/variant-widget/filters/eva-protein-substitutions-score-filter-form-panel.js',
'src/js/variant-widget/filters/eva-consequence-type-filter-form-panel.js',
'src/js/variant-widget/filters/eva-conservation-score-filter-form-panel.js',
'src/js/variant-widget/filters/eva-annotation-version-filter-form-panel.js',
'src/js/study-browser/eva-study-browser-widget-panel.js',
'src/js/study-browser/eva-study-browser-filter-form-panel.js',
'src/js/study-browser/eva-study-browser-type-filter-form-panel.js',
'src/js/study-browser/eva-study-browser-text-search-form-panel.js',
'src/js/study-browser/eva-study-browser-grid.js',
'src/js/views/eva-study-view.js',
'src/js/views/eva-variant-view.js',
'src/js/views/eva-multi-variant-view.js',
'src/js/statistics/eva-statistics.js',
'src/js/statistics/dgva-statistics.js',
'src/js/beacon-form/eva-beacon-panel.js',
'src/js/beacon-form/eva-beacon-form.js',
'src/js/beacon-form/eva-variant-search-form.js',
'src/js/dbSNP-import/dbSNP-import-progress.js',
'src/js/rs-release/rs-release.js',
'src/js/eva.js',
'src/js/eva-google-analytics.js ',
'src/js/footer/footer.js ',
],
dest: '<%= build.dir %>/js/eva-<%= meta.version.eva %>.js'
},
vendors: {
src: [
'./bower_components/jquery/dist/jquery.js',
'./bower_components/underscore/underscore.js',
'./bower_components/backbone/backbone.js',
'./bower_components/highcharts-release/highcharts.js',
'./bower_components/linqjs/linq.js',
'./bower_components/vkbeautify/vkbeautify.js',
'./bower_components/autotrack/autotrack.js'
],
dest: '<%= build.dir %>/vendor/vendors.js'
},
ebi_framework_css: {
src: [
'lib/EBI-Framework/css/ebi-global.css',
'lib/EBI-Framework/libraries/foundation-6/css/foundation.css',
'lib/EBI-Framework/css/theme-embl-petrol.css'
],
dest: '<%= build.dir %>/lib/EBI-Framework/css/ebi-framework.css',
},
ebi_framework_js: {
src: [
'lib/EBI-Framework/js/cookiebanner.js',
'lib/EBI-Framework/js/script.js',
'lib/EBI-Framework/libraries/foundation-6/js/foundation.js',
'lib/EBI-Framework/js/foundationExtendEBI.js',
'lib/EBI-Framework/libraries/tablesorter/dist/js/jquery.tablesorter.min.js'
],
dest: '<%= build.dir %>/lib/EBI-Framework/js/ebi-framework-'+date+'.js'
}
},
uglify: {
eva: {
src: '<%= concat.eva.dest %>',
dest: '<%= build.dir %>/js/eva-<%= meta.version.eva %>-'+date+'.min.js'
},
gv_config: {
src: 'lib/jsorolla/build/1.1.9/genome-viewer/gv-config.js',
dest: 'lib/jsorolla/build/1.1.9/genome-viewer/gv-config.min.js'
},
vendors: {
src: '<%= concat.vendors.dest %>',
dest: '<%= build.dir %>/vendor/vendors-'+date+'.min.js'
},
ebi_framework_js : {
src: '<%= concat.ebi_framework_js.dest %>',
dest: '<%= build.dir %>/lib/EBI-Framework/js/ebi-framework-'+date+'.min.js'
}
},
copy: {
eva: {
files: [
{ expand: true, src: ['src/files/*'], dest: '<%= build.dir %>/files', flatten: true},
{ expand: true, src: ['src/css/*'], dest: '<%= build.dir %>/css', flatten: true},
{ expand: true, src: ['src/img/'], dest: '<%= build.dir %>/', flatten: true},
{ expand: true, src: ['src/img/optimized/*'], dest: '<%= build.dir %>/img/optimized', flatten: true},
{ expand: true, src: ['src/*.html'], dest: '<%= build.dir %>/', flatten: true, filter: 'isFile'},
{ expand: true, src: ['lib/jsorolla/build/1.1.9/genome-viewer/*.js'], dest: '<%= build.dir %>',flatten: false},
{ expand: true, src: ['lib/jsorolla/vendor/**'], dest: '<%= build.dir %>',flatten: false},
{ expand: true, src: ['vendor/ext-6.0.1/**'], dest: '<%= build.dir %>'},
{ expand: true, src: ['lib/EBI-Framework/libraries/modernizr/*'], dest: '<%= build.dir %>', flatten: false},
{ expand: true, src: ['lib/EBI-Framework/images/**'], dest: '<%= build.dir %>', flatten: false},
{ expand: true, src: ['lib/EBI-Framework/libraries/tablesorter/css/images/**'], dest: '<%= build.dir %>', flatten: false}
]
}
},
cssmin: {
eva: {
files: [{
expand: true,
cwd: '<%= build.dir %>/css',
src: ['*.css'],
dest: '<%= build.dir %>/css',
ext: '-<%= meta.version.eva %>-'+date+'.min.css'
}]
},
ebi_framework: {
files: [{
expand: true,
cwd: '<%= build.dir %>/lib/EBI-Framework/css',
src: ['*.css'],
dest: '<%= build.dir %>/lib/EBI-Framework/css',
ext: '-<%= meta.version.eva %>-'+date+'.min.css'
}]
}
},
clean: {
eva: ['<%= build.dir %>/']
},
htmlbuild: {
eva: {
src: 'src/index.html',
dest: '<%= build.dir %>/',
options: {
beautify: true,
scripts: {
'eva-js': '<%= uglify.eva.dest %>',
'lib': [
'<%= build.dir %>/lib/jsorolla/build/*/genome-viewer/genome-viewer.min.js',
'<%= build.dir %>/lib/jsorolla/build/*/genome-viewer/gv-config.min.js'
],
'vendor': [
'<%= build.dir %>/vendor/ext-6.0.1/js/ext-all.js',
'<%= uglify.vendors.dest %>'
],
'modernizr': '<%= build.dir %>/lib/EBI-Framework/libraries/modernizr/*.js',
'ebi_framework': '<%= uglify.ebi_framework_js.dest %>'
},
styles: {
'ebi_framework': [
'<%= build.dir %>/lib/EBI-Framework/css/*.min.css'
],
'css': [
'<%= build.dir %>/css/*.min.css'
],
'vendor': [
'<%= build.dir %>/vendor/ext-6.0.1/theme/theme-ebi-embl-all.css'
]
}
}
}
},
minifyHtml: {
options: {
cdata: true
},
dist: {
files: {
'<%= build.dir %>/index.html': '<%= build.dir %>/index.html'
}
}
},
imagemin: {
dynamic: {
files: [{
expand: true,
cwd: 'src/img/',
src: ['**/*.{png,jpg,gif,svg}', '!optimized/**'],
dest: '<%= build.dir %>/img/'
}]
}
},
mochaTest: {
acceptanceTest: {
options: {
quiet: false,
clearRequireCache: false,
timeout:1500000
},
src: [
'tests/acceptance/all_page.js',
'tests/acceptance/dbSNP_import.js',
'tests/acceptance/home_page.js',
'tests/acceptance/multi_variant_view.js',
'tests/acceptance/rs_release.js',
'tests/acceptance/study_browser.js',
'tests/acceptance/study_view.js',
'tests/acceptance/variant_browser.js',
'tests/acceptance/variant_view.js'
]
}
},
mocha_phantomjs: {
unitTest: {
src: ['./tests/**/*.html'],
},
options: {
run: true
}
},
exec: {
startServer: {
cmd: 'nohup grunt serve &'
},
cleanBower: {
cmd: 'rm -rf bower_components'
},
firefox: {
cmd: 'env BROWSER=firefox grunt acceptanceTest --colors'
},
chrome: {
cmd: 'env BROWSER=chrome grunt acceptanceTest --colors'
}
},
bower: {
install: {
options: {
targetDir: './tmp',
install: true,
copy: true
}
}
}
});
// These plugins provide necessary tasks.
grunt.loadNpmTasks('grunt-contrib-concat');
grunt.loadNpmTasks('grunt-contrib-uglify');
grunt.loadNpmTasks('grunt-contrib-copy');
grunt.loadNpmTasks('grunt-contrib-clean');
grunt.loadNpmTasks('grunt-contrib-rename');
grunt.loadNpmTasks('grunt-html-build');
grunt.loadNpmTasks('grunt-hub');
grunt.loadNpmTasks('grunt-mocha-test');
grunt.loadNpmTasks('grunt-exec');
grunt.loadNpmTasks('grunt-contrib-cssmin');
grunt.loadNpmTasks('grunt-minify-html');
grunt.loadNpmTasks('grunt-contrib-imagemin');
grunt.loadNpmTasks('grunt-bower-task');
grunt.loadNpmTasks('grunt-config');
grunt.loadNpmTasks('grunt-replace');
grunt.loadNpmTasks('grunt-mocha-phantomjs');
grunt.loadNpmTasks('grunt-serve');
//replace config
grunt.registerTask('replace-config', ['replace:eva_manager', 'replace:acceptance_test']);
//replace html
grunt.registerTask('replace-html', ['replace:html']);
//selenium with mocha
grunt.registerTask('acceptanceTest', ['mochaTest:acceptanceTest']);
// unit tests with mocha_phantomjs to run from command line
grunt.registerTask('unitTest', ['mocha_phantomjs:unitTest']);
//run test
grunt.registerTask('runAcceptanceTest', ['exec:chrome']);
//bower install
grunt.registerTask('bower-install', ['bower:install']);
//bower clean
grunt.registerTask('bower-clean', ['exec:cleanBower']);
//start http server
grunt.registerTask('start-server', ['exec:startServer']);
grunt.registerTask('run-all-tests', [
'start-server',
'config:' + envTarget,
'replace-config',
'bower-install',
'hub:genomeViewer',
'clean:eva',
'concat',
'uglify',
'copy:eva',
'cssmin',
'htmlbuild:eva',
'replace-html',
'minifyHtml',
'imagemin',
'unitTest',
'runAcceptanceTest'
]);
//default build website.
grunt.registerTask('default', [
'start-server',
'config:' + envTarget,
'replace-config',
'bower-install',
'hub:genomeViewer',
'clean:eva',
'concat',
'uglify',
'copy:eva',
'cssmin',
'htmlbuild:eva',
'replace-html',
'minifyHtml',
'imagemin'
]);
};