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Finally, I tracked a fail of Python_particle_attr_access :)
Python_particle_attr_access
2022-01-20T01:57:50.8288742Z �[1mworking on test: Python_particle_attr_access�[0m 2022-01-20T01:57:50.8289121Z re-making clean... 2022-01-20T01:57:50.8289344Z building... 2022-01-20T01:57:50.8289441Z 2022-01-20T01:57:50.8289814Z �[1mconfiguring Python_particle_attr_access build...�[0m 2022-01-20T01:57:50.8290110Z mkdir /tmp/ci/warpx/builddir 2022-01-20T01:57:50.8290710Z cmake -DAMReX_ASSERTIONS=ON -DAMReX_TESTING=ON -DWarpX_DIMS=2 -DWarpX_LIB=ON -DWarpX_APP=OFF -S /tmp/ci/warpx/ -B /tmp/ci/warpx/builddir 2022-01-20T01:57:50.8290987Z 2022-01-20T01:57:50.8291341Z �[1mbuilding Python_particle_attr_access...�[0m 2022-01-20T01:57:50.8291787Z cmake --build /tmp/ci/warpx/builddir -j 2 -- install_pip 2022-01-20T01:57:50.8292091Z Compilation time: 38.775 s 2022-01-20T01:57:50.8292604Z run & test directory: /tmp/ci/rt-WarpX/WarpX-tests/2022-01-20/Python_particle_attr_access/ 2022-01-20T01:57:50.8292961Z copying files to run directory... 2022-01-20T01:57:50.8293282Z path to input file: Examples/Tests/ParticleDataPython/PICMI_inputs_2d.py 2022-01-20T01:57:50.8293591Z running the test... 2022-01-20T01:57:50.8293964Z mpiexec -n 2 python3 PICMI_inputs_2d.py 2022-01-20T01:57:50.8294382Z �[33m WARNING: Test stdout:�[0m 2022-01-20T01:57:50.8294654Z MPI initialized with 2 MPI processes 2022-01-20T01:57:50.8294931Z MPI initialized with thread support level 3 2022-01-20T01:57:50.8295191Z OMP initialized with 1 OMP threads 2022-01-20T01:57:50.8295588Z AMReX (22.01-29-g812836f08a75) initialized 2022-01-20T01:57:50.8295957Z WarpX (22.01-nogit) 2022-01-20T01:57:50.8296173Z PICSAR (7b5449f92a4b) 2022-01-20T01:57:50.8296606Z Level 0: dt = 7.5e-10 ; dx = 0.00046875 ; dz = 0.00046875 2022-01-20T01:57:50.8296766Z 2022-01-20T01:57:50.8296953Z Grids Summary: 2022-01-20T01:57:50.8297217Z Level 0 4 grids 4096 cells 100 % of domain 2022-01-20T01:57:50.8297538Z smallest grid: 32 x 32 biggest grid: 32 x 32 2022-01-20T01:57:50.8297716Z 2022-01-20T01:57:50.8297962Z Writing plotfile ./Python_particle_attr_access_plt00000 2022-01-20T01:57:50.8298113Z 2022-01-20T01:57:50.8298308Z STEP 1 starts ... 2022-01-20T01:57:50.8298408Z 2022-01-20T01:57:50.8298486Z 2022-01-20T01:57:50.8298747Z **** WARNINGS ****************************************************************** 2022-01-20T01:57:50.8299082Z * GLOBAL warning list after [ FIRST STEP ] 2022-01-20T01:57:50.8299296Z * 2022-01-20T01:57:50.8299672Z * --> [! ] [ElectrostaticSolver] [raised twice] 2022-01-20T01:57:50.8299929Z * Max norm of rho is 0 2022-01-20T01:57:50.8300174Z * @ Raised by: ALL 2022-01-20T01:57:50.8300370Z * 2022-01-20T01:57:50.8300709Z * --> [! ] [Geometry] [raised twice] 2022-01-20T01:57:50.8301037Z * geometry.coord_sys is ignored. Please use the new geometry.dims parameter. 2022-01-20T01:57:50.8301334Z * @ Raised by: ALL 2022-01-20T01:57:50.8301544Z * 2022-01-20T01:57:50.8301806Z ******************************************************************************** 2022-01-20T01:57:50.8301989Z 2022-01-20T01:57:50.8302349Z STEP 1 ends. TIME = 7.5e-10 DT = 7.5e-10 2022-01-20T01:57:50.8302872Z Evolve time = 0.006112379 s; This step = 0.006112379 s; Avg. per step = 0.006112379 s 2022-01-20T01:57:50.8303100Z 2022-01-20T01:57:50.8303306Z STEP 2 starts ... 2022-01-20T01:57:50.8303807Z STEP 2 ends. TIME = 1.5e-09 DT = 7.5e-10 2022-01-20T01:57:50.8304198Z Evolve time = 0.011394047 s; This step = 0.005281668 s; Avg. per step = 0.0056970235 s 2022-01-20T01:57:50.8304414Z 2022-01-20T01:57:50.8304633Z STEP 3 starts ... 2022-01-20T01:57:50.8305095Z STEP 3 ends. TIME = 2.25e-09 DT = 7.5e-10 2022-01-20T01:57:50.8305474Z Evolve time = 0.01708462 s; This step = 0.005690573 s; Avg. per step = 0.005694873333 s 2022-01-20T01:57:50.8305704Z 2022-01-20T01:57:50.8305910Z STEP 4 starts ... 2022-01-20T01:57:50.8306338Z STEP 4 ends. TIME = 3e-09 DT = 7.5e-10 2022-01-20T01:57:50.8306713Z Evolve time = 0.022683593 s; This step = 0.005598973 s; Avg. per step = 0.00567089825 s 2022-01-20T01:57:50.8307006Z 2022-01-20T01:57:50.8307232Z STEP 5 starts ... 2022-01-20T01:57:50.8307667Z STEP 5 ends. TIME = 3.75e-09 DT = 7.5e-10 2022-01-20T01:57:50.8308061Z Evolve time = 0.028374566 s; This step = 0.005690973 s; Avg. per step = 0.0056749132 s 2022-01-20T01:57:50.8308277Z 2022-01-20T01:57:50.8308484Z STEP 6 starts ... 2022-01-20T01:57:50.8308923Z STEP 6 ends. TIME = 4.5e-09 DT = 7.5e-10 2022-01-20T01:57:50.8309303Z Evolve time = 0.034569646 s; This step = 0.00619508 s; Avg. per step = 0.005761607667 s 2022-01-20T01:57:50.8309521Z 2022-01-20T01:57:50.8309743Z STEP 7 starts ... 2022-01-20T01:57:50.8310166Z STEP 7 ends. TIME = 5.25e-09 DT = 7.5e-10 2022-01-20T01:57:50.8310561Z Evolve time = 0.040057917 s; This step = 0.005488271 s; Avg. per step = 0.005722559571 s 2022-01-20T01:57:50.8310781Z 2022-01-20T01:57:50.8310986Z STEP 8 starts ... 2022-01-20T01:57:50.8311414Z STEP 8 ends. TIME = 6e-09 DT = 7.5e-10 2022-01-20T01:57:50.8311789Z Evolve time = 0.046073294 s; This step = 0.006015377 s; Avg. per step = 0.00575916175 s 2022-01-20T01:57:50.8312011Z 2022-01-20T01:57:50.8312232Z STEP 9 starts ... 2022-01-20T01:57:50.8312651Z STEP 9 ends. TIME = 6.75e-09 DT = 7.5e-10 2022-01-20T01:57:50.8313048Z Evolve time = 0.051576365 s; This step = 0.005503071 s; Avg. per step = 0.005730707222 s 2022-01-20T01:57:50.8313443Z Writing plotfile ./Python_particle_attr_access_plt00009 2022-01-20T01:57:50.8313718Z 2022-01-20T01:57:50.8313811Z 2022-01-20T01:57:50.8314114Z TinyProfiler total time across processes [min...avg...max]: 0.06583 ... 0.06596 ... 0.06608 2022-01-20T01:57:50.8314333Z 2022-01-20T01:57:50.8314830Z ----------------------------------------------------------------------------------------------------- 2022-01-20T01:57:50.8315254Z Name NCalls Excl. Min Excl. Avg Excl. Max Max % 2022-01-20T01:57:50.8315866Z ----------------------------------------------------------------------------------------------------- 2022-01-20T01:57:50.8316504Z MLNodeTensorLaplacian::Fsmooth() 2160 0.01103 0.01184 0.01266 19.15% 2022-01-20T01:57:50.8317017Z FabArray::ParallelCopy_finish() 803 0.001269 0.004649 0.008029 12.15% 2022-01-20T01:57:50.8317683Z FillBoundary_nowait() 2378 0.005533 0.006353 0.007173 10.86% 2022-01-20T01:57:50.8318189Z VisMF::Write(FabArray) 2 0.001313 0.003831 0.006349 9.61% 2022-01-20T01:57:50.8318670Z FillBoundary_finish() 2378 0.002627 0.003176 0.003725 5.64% 2022-01-20T01:57:50.8319166Z numParticlesOutOfRange() 44 0.0001382 0.001692 0.003246 4.91% 2022-01-20T01:57:50.8319650Z MLNodeLinOp::applyBC() 2360 0.002817 0.002903 0.002989 4.52% 2022-01-20T01:57:50.8320153Z FabArray::ParallelCopy_nowait() 803 0.002003 0.002422 0.002841 4.30% 2022-01-20T01:57:50.8320640Z warpx_py_beforestep 9 0.002009 0.002339 0.002668 4.04% 2022-01-20T01:57:50.8321131Z WriteMultiLevelPlotfile() 2 0.000209 0.001225 0.002241 3.39% 2022-01-20T01:57:50.8321607Z OverrideSync_nowait() 577 0.001881 0.002056 0.002232 3.38% 2022-01-20T01:57:50.8322198Z FabArray::setVal() 1147 0.001655 0.001857 0.002058 3.12% 2022-01-20T01:57:50.8322687Z ParticleContainer::RedistributeMPI() 20 0.0001758 0.001113 0.00205 3.10% 2022-01-20T01:57:50.8323440Z FlushFormatPlotfile::WriteToFile() 2 5.76e-05 0.0009778 0.001898 2.87% 2022-01-20T01:57:50.8323943Z MLNodeTensorLaplacian::Fapply() 200 0.001317 0.001404 0.001491 2.26% 2022-01-20T01:57:50.8324448Z OverrideSync_finish() 577 0.001175 0.001297 0.001419 2.15% 2022-01-20T01:57:50.8325009Z WarpX::Evolve::step 9 0.0002181 0.000803 0.001388 2.10% 2022-01-20T01:57:50.8325510Z WriteBinaryParticleData() 2 0.0003158 0.0008338 0.001352 2.05% 2022-01-20T01:57:50.8325992Z FabArray::FillBoundary() 2378 0.0009307 0.001002 0.001073 1.62% 2022-01-20T01:57:50.8326496Z WarpX::AddSpaceChargeFieldLabFrame 10 0.0007831 0.0008417 0.0009003 1.36% 2022-01-20T01:57:50.8326986Z MLNodeTensorLaplacian::smooth() 540 0.0006973 0.0007031 0.0007088 1.07% 2022-01-20T01:57:50.8327498Z MLNodeTensorLaplacian::interpolation() 135 0.0006068 0.000645 0.0006832 1.03% 2022-01-20T01:57:50.8327987Z WarpX::InitData() 1 0.0004247 0.0005508 0.0006768 1.02% 2022-01-20T01:57:50.8328485Z FabArrayBase::getFB() 2438 0.0006087 0.0006186 0.0006284 0.95% 2022-01-20T01:57:50.8328979Z ParticleContainer::RedistributeCPU() 20 0.0005531 0.000566 0.0005788 0.88% 2022-01-20T01:57:50.8329481Z MLCGSolver::bicgstab 13 0 0.000281 0.000562 0.85% 2022-01-20T01:57:50.8329972Z MLNodeTensorLaplacian::restriction() 135 0.0004579 0.0005053 0.0005526 0.84% 2022-01-20T01:57:50.8330479Z MLMG::prepareForSolve() 10 0.0004627 0.0005001 0.0005374 0.81% 2022-01-20T01:57:50.8330977Z ablastr::particles::deposit_charge::Accumulate 68 0.0004275 0.0004277 0.0004278 0.65% 2022-01-20T01:57:50.8331485Z OwnerMask() 70 0.0003178 0.0003662 0.0004146 0.63% 2022-01-20T01:57:50.8331964Z MLLinOp::makeSubCommunicator() 10 0.0003509 0.0003784 0.0004058 0.61% 2022-01-20T01:57:50.8332462Z Filter::ApplyStencil(MultiFab) 10 0.0003854 0.0003888 0.0003922 0.59% 2022-01-20T01:57:50.8332951Z FabArrayBase::getCPC() 803 0.0003255 0.0003351 0.0003447 0.52% 2022-01-20T01:57:50.8333455Z FabArrayBase::FB::FB() 81 0.0001305 0.0002344 0.0003382 0.51% 2022-01-20T01:57:50.8333952Z MLNodeLinOp::buildMasks() 10 0.0002749 0.000298 0.0003211 0.49% 2022-01-20T01:57:50.8334691Z DistributionMapping::LeastUsedCPUs() 1 1.25e-05 0.0001566 0.0003007 0.46% 2022-01-20T01:57:50.8335189Z WarpX::SyncRho() 10 0.0001762 0.0002262 0.0002762 0.42% 2022-01-20T01:57:50.8335686Z MLMG::ResNormInf() 37 0.0002409 0.0002503 0.0002596 0.39% 2022-01-20T01:57:50.8336166Z OverrideSync() 577 0.0002347 0.0002412 0.0002477 0.37% 2022-01-20T01:57:50.8336665Z FabArrayBase::CPC::define() 102 0.0001188 0.0001831 0.0002474 0.37% 2022-01-20T01:57:50.8337162Z MultiFab::Xpay() 148 0.0001978 0.0002223 0.0002467 0.37% 2022-01-20T01:57:50.8337667Z MLNodeTensorLaplacian::define() 10 0.0002029 0.0002236 0.0002442 0.37% 2022-01-20T01:57:50.8338224Z MLMG::addInterpCorrection() 135 0.0001989 0.0002156 0.0002323 0.35% 2022-01-20T01:57:50.8338719Z MLMG::mgVcycle() 27 0.0001801 0.0001967 0.0002133 0.32% 2022-01-20T01:57:50.8339202Z FabArray::BuildMask() 60 0.0001653 0.0001827 0.0002001 0.30% 2022-01-20T01:57:50.8339701Z MLCGSolver::ParallelAllReduce 57 0 0.0001001 0.0002001 0.30% 2022-01-20T01:57:50.8340187Z MLLinOp::defineGrids() 10 0.00017 0.0001727 0.0001753 0.27% 2022-01-20T01:57:50.8340771Z PhysicalParticleContainer::Evolve::GatherAndPush 68 0.0001247 0.0001299 0.0001351 0.20% 2022-01-20T01:57:50.8341271Z MLMG::computeResidual() 27 0.0001209 0.000123 0.0001251 0.19% 2022-01-20T01:57:50.8341764Z WarpX::PrintGlobalWarnings 1 0.0001078 0.0001163 0.0001247 0.19% 2022-01-20T01:57:50.8342522Z Diagnostics::FilterComputePackFlush() 11 4.04e-05 8.12e-05 0.000122 0.18% 2022-01-20T01:57:50.8343156Z FabArray::ParallelCopy() 226 9.8e-05 0.0001046 0.0001111 0.17% 2022-01-20T01:57:50.8343580Z MLMG::oneIter() 27 0.0001021 0.0001064 0.0001107 0.17% 2022-01-20T01:57:50.8344202Z MLMG:computeResOfCorrection() 135 8.49e-05 9.175e-05 9.86e-05 0.15% 2022-01-20T01:57:50.8344812Z MLMG::solve() 10 7.09e-05 8.445e-05 9.8e-05 0.15% 2022-01-20T01:57:50.8345445Z FabArray::setVal(val, thecmd, scomp, ncomp) 60 9.01e-05 9.355e-05 9.7e-05 0.15% 2022-01-20T01:57:50.8346295Z WarpXParticleContainer::DepositCharge 10 8.9e-05 9.075e-05 9.25e-05 0.14% 2022-01-20T01:57:50.8347094Z PhysicalParticleContainer::Evolve() 9 7.26e-05 8.01e-05 8.76e-05 0.13% 2022-01-20T01:57:50.8349487Z MultiFab::LinComb() 30 0 4.25e-05 8.5e-05 0.13% 2022-01-20T01:57:50.8350257Z CoarsenIO::Coarsen() 2 7.37e-05 7.445e-05 7.52e-05 0.11% 2022-01-20T01:57:50.8350969Z MultiFab::Dot() 30 0 3.69e-05 7.38e-05 0.11% 2022-01-20T01:57:50.8351691Z MultiFab::Multiply() 30 0 3.45e-05 6.9e-05 0.10% 2022-01-20T01:57:50.8352406Z MLMG::actualBottomSolve() 27 7e-06 3.12e-05 5.54e-05 0.08% 2022-01-20T01:57:50.8353132Z PhysicalParticleContainer::PushP() 2 4.71e-05 4.805e-05 4.9e-05 0.07% 2022-01-20T01:57:50.8353866Z MLMG::computeMLResidual() 10 4.79e-05 4.8e-05 4.81e-05 0.07% 2022-01-20T01:57:50.8354581Z MLMG::mgVcycle_up::2 27 1.68e-05 3.2e-05 4.72e-05 0.07% 2022-01-20T01:57:50.8355321Z ParticleContainer::WriteParticles() 1 3.79e-05 4.25e-05 4.71e-05 0.07% 2022-01-20T01:57:50.8356035Z MLMG::MLRhsNormInf() 10 4.54e-05 4.555e-05 4.57e-05 0.07% 2022-01-20T01:57:50.8356765Z WarpXParticleContainer::ApplyBoundaryConditions() 9 3.9e-05 4.02e-05 4.14e-05 0.06% 2022-01-20T01:57:50.8357690Z ParticleContainer::addParticles 2 3.54e-05 3.625e-05 3.71e-05 0.06% 2022-01-20T01:57:50.8358446Z MLMG::mgVcycle_down::0 27 3.43e-05 3.47e-05 3.51e-05 0.05% 2022-01-20T01:57:50.8359167Z FabArray::mult() 10 3.01e-05 3.06e-05 3.11e-05 0.05% 2022-01-20T01:57:50.8362720Z MLMG::mgVcycle_down::1 27 2.72e-05 2.8e-05 2.88e-05 0.04% 2022-01-20T01:57:50.8363673Z MLMG::mgVcycle_down::2 27 2.54e-05 2.65e-05 2.76e-05 0.04% 2022-01-20T01:57:50.8364469Z MultiFab::Copy() 10 2.68e-05 2.72e-05 2.76e-05 0.04% 2022-01-20T01:57:50.8365241Z CGSolver::sxay() 30 0 1.3e-05 2.6e-05 0.04% 2022-01-20T01:57:50.8366029Z MLMG::mgVcycle_down::4 27 2.35e-05 2.42e-05 2.49e-05 0.04% 2022-01-20T01:57:50.8366794Z makeSFC 40 2.36e-05 2.42e-05 2.48e-05 0.04% 2022-01-20T01:57:50.8367579Z MLMG::mgVcycle_down::3 27 2.23e-05 2.335e-05 2.44e-05 0.04% 2022-01-20T01:57:50.8368454Z MLLinOp::define() 10 2.24e-05 2.315e-05 2.39e-05 0.04% 2022-01-20T01:57:50.8369246Z MLMG::mgVcycle_up::4 27 2.02e-05 2.145e-05 2.27e-05 0.03% 2022-01-20T01:57:50.8370016Z RedistributeMPI_locate 8 1.39e-05 1.755e-05 2.12e-05 0.03% 2022-01-20T01:57:50.8370804Z PhysicalParticleContainer::ConvertUnits() 4 1.89e-05 1.985e-05 2.08e-05 0.03% 2022-01-20T01:57:50.8371582Z MLMG::mgVcycle_up::0 27 1.95e-05 2.01e-05 2.07e-05 0.03% 2022-01-20T01:57:50.8372372Z MLMG::mgVcycle_up::1 27 1.89e-05 1.945e-05 2e-05 0.03% 2022-01-20T01:57:50.8373159Z ablastr::particles::deposit_charge::ChargeDeposition 68 1.84e-05 1.915e-05 1.99e-05 0.03% 2022-01-20T01:57:50.8373970Z MLMG::mgVcycle_up::3 27 1.71e-05 1.76e-05 1.81e-05 0.03% 2022-01-20T01:57:50.8374738Z MLLinOp::makeAgglomeratedDMap 10 1.6e-05 1.61e-05 1.62e-05 0.02% 2022-01-20T01:57:50.8375519Z WarpX::ComputeSpaceChargeField 10 1.36e-05 1.42e-05 1.48e-05 0.02% 2022-01-20T01:57:50.8376295Z DistributionMapping::Distribute() 41 1.36e-05 1.405e-05 1.45e-05 0.02% 2022-01-20T01:57:50.8377082Z MLMG::mgVcycle_bottom 27 1.25e-05 1.325e-05 1.4e-05 0.02% 2022-01-20T01:57:50.8377836Z RedistributeMPI_copy 8 1.22e-05 1.22e-05 1.22e-05 0.02% 2022-01-20T01:57:50.8378626Z WarpX::ComputeSpaceChargeField::reset_fields 9 1.07e-05 1.125e-05 1.18e-05 0.02% 2022-01-20T01:57:50.8379410Z ParticleContainer::OK() 22 1e-05 1.055e-05 1.11e-05 0.02% 2022-01-20T01:57:50.8380203Z WarpX::Evolve() 1 4.6e-06 6.65e-06 8.7e-06 0.01% 2022-01-20T01:57:50.8381083Z WarpX::UpdateAuxilaryData() 13 7.6e-06 7.8e-06 8e-06 0.01% 2022-01-20T01:57:50.8381721Z MLNodeTensorLaplacian::prepareForSolve() 10 7.2e-06 7.35e-06 7.5e-06 0.01% 2022-01-20T01:57:50.8382347Z WarpX::RecordWarning 2 5.1e-06 5.85e-06 6.601e-06 0.01% 2022-01-20T01:57:50.8382982Z DistributionMapping::SFCProcessorMapDoIt() 1 4.3e-06 5.1e-06 5.9e-06 0.01% 2022-01-20T01:57:50.8383606Z WarpXCommUtil::FillBoundary 18 5.7e-06 5.75e-06 5.8e-06 0.01% 2022-01-20T01:57:50.8384241Z MLMG::buildFineMask() 10 5.3e-06 5.45e-06 5.6e-06 0.01% 2022-01-20T01:57:50.8384862Z MultiParticleContainer::doQedEvents() 9 5.4e-06 5.45e-06 5.5e-06 0.01% 2022-01-20T01:57:50.8385509Z MultiParticleContainer::doFieldIonization() 9 3.9e-06 4.6e-06 5.3e-06 0.01% 2022-01-20T01:57:50.8386128Z MLMG::MLResNormInf() 10 4.6e-06 4.85e-06 5.1e-06 0.01% 2022-01-20T01:57:50.8386766Z MultiParticleContainer::doCollisions() 9 3.4e-06 3.85e-06 4.3e-06 0.01% 2022-01-20T01:57:50.8387465Z MultiParticleContainer::doQedBreitWheeler() 9 3.5e-06 3.9e-06 4.3e-06 0.01% 2022-01-20T01:57:50.8388109Z MultiParticleContainer::doQedQuantumSync() 9 2.7e-06 2.85e-06 3e-06 0.00% 2022-01-20T01:57:50.8388736Z ParticleContainer::copyParticles 2 1.9e-06 2.25e-06 2.6e-06 0.00% 2022-01-20T01:57:50.8389377Z MultiParticleContainer::doQEDSchwinger() 9 2.1e-06 2.25e-06 2.4e-06 0.00% 2022-01-20T01:57:50.8390001Z ParticleContainer::WritePlotFile() 2 2.2e-06 2.2e-06 2.2e-06 0.00% 2022-01-20T01:57:50.8390708Z PhysicalParticleContainer::AddParticles() 2 1e-06 1.1e-06 1.2e-06 0.00% 2022-01-20T01:57:50.8391331Z BilinearFilter::ComputeStencils() 1 1e-06 1.1e-06 1.2e-06 0.00% 2022-01-20T01:57:50.8392079Z ParticleContainer::clearParticles() 2 9e-07 1e-06 1.1e-06 0.00% 2022-01-20T01:57:50.8392606Z ----------------------------------------------------------------------------------------------------- 2022-01-20T01:57:50.8392799Z 2022-01-20T01:57:50.8393202Z ----------------------------------------------------------------------------------------------------- 2022-01-20T01:57:50.8393563Z Name NCalls Incl. Min Incl. Avg Incl. Max Max % 2022-01-20T01:57:50.8394083Z ----------------------------------------------------------------------------------------------------- 2022-01-20T01:57:50.8394448Z WarpX::Evolve() 1 0.05692 0.05698 0.05705 86.33% 2022-01-20T01:57:50.8397680Z WarpX::Evolve::step 9 0.05254 0.05315 0.05376 81.36% 2022-01-20T01:57:50.8398066Z WarpX::ComputeSpaceChargeField 10 0.04867 0.0487 0.04872 73.73% 2022-01-20T01:57:50.8398467Z WarpX::AddSpaceChargeFieldLabFrame 10 0.04851 0.04853 0.04855 73.47% 2022-01-20T01:57:50.8398836Z MLMG::solve() 10 0.04409 0.0442 0.04431 67.05% 2022-01-20T01:57:50.8399216Z MLMG::oneIter() 27 0.04072 0.04073 0.04073 61.65% 2022-01-20T01:57:50.8399579Z MLMG::mgVcycle() 27 0.04004 0.04005 0.04005 60.62% 2022-01-20T01:57:50.8400676Z MLNodeTensorLaplacian::smooth() 540 0.02866 0.03064 0.03261 49.35% 2022-01-20T01:57:50.8401068Z MLNodeLinOp::applyBC() 2360 0.01321 0.01381 0.01441 21.81% 2022-01-20T01:57:50.8401460Z MLNodeTensorLaplacian::Fsmooth() 2160 0.01103 0.01184 0.01266 19.15% 2022-01-20T01:57:50.8401832Z FabArray::FillBoundary() 2378 0.01085 0.01127 0.01169 17.69% 2022-01-20T01:57:50.8402221Z MLMG::mgVcycle_up::1 27 0.005134 0.008303 0.01147 17.36% 2022-01-20T01:57:50.8402594Z Diagnostics::FilterComputePackFlush() 11 0.007661 0.008985 0.01031 15.60% 2022-01-20T01:57:50.8402983Z FlushFormatPlotfile::WriteToFile() 2 0.007161 0.008544 0.009926 15.02% 2022-01-20T01:57:50.8403360Z MLMG::mgVcycle_down::0 27 0.008283 0.008285 0.008288 12.54% 2022-01-20T01:57:50.8403744Z OverrideSync() 577 0.007003 0.007554 0.008105 12.27% 2022-01-20T01:57:50.8404113Z FabArray::ParallelCopy_finish() 803 0.001269 0.004649 0.008029 12.15% 2022-01-20T01:57:50.8404491Z FillBoundary_nowait() 2378 0.006199 0.007093 0.007987 12.09% 2022-01-20T01:57:50.8404856Z MLMG::mgVcycle_up::0 27 0.007636 0.007642 0.007648 11.57% 2022-01-20T01:57:50.8405375Z FabArray::ParallelCopy() 226 0.001472 0.004554 0.007636 11.56% 2022-01-20T01:57:50.8405741Z MLMG::addInterpCorrection() 135 0.001499 0.004543 0.007586 11.48% 2022-01-20T01:57:50.8406124Z WarpX::InitData() 1 0.006402 0.006972 0.007542 11.41% 2022-01-20T01:57:50.8406484Z WriteMultiLevelPlotfile() 2 0.003554 0.005056 0.006558 9.92% 2022-01-20T01:57:50.8406860Z VisMF::Write(FabArray) 2 0.001313 0.003831 0.006349 9.61% 2022-01-20T01:57:50.8407282Z OverrideSync_nowait() 577 0.004536 0.005028 0.00552 8.35% 2022-01-20T01:57:50.8407656Z warpx_py_beforestep 9 0.002577 0.003856 0.005135 7.77% 2022-01-20T01:57:50.8408021Z MLMG::mgVcycle_down::1 27 0.005085 0.005106 0.005128 7.76% 2022-01-20T01:57:50.8408405Z FillBoundary_finish() 2378 0.002627 0.003176 0.003725 5.64% 2022-01-20T01:57:50.8408770Z ParticleContainer::WritePlotFile() 2 0.001412 0.002451 0.00349 5.28% 2022-01-20T01:57:50.8409147Z WriteBinaryParticleData() 2 0.001409 0.002449 0.003488 5.28% 2022-01-20T01:57:50.8409506Z FabArray::ParallelCopy_nowait() 803 0.002447 0.00294 0.003433 5.19% 2022-01-20T01:57:50.8409889Z ParticleContainer::OK() 22 0.0001493 0.001703 0.003256 4.93% 2022-01-20T01:57:50.8410261Z numParticlesOutOfRange() 44 0.0001382 0.001692 0.003246 4.91% 2022-01-20T01:57:50.8410640Z MLMG::mgVcycle_down::2 27 0.001344 0.002071 0.002797 4.23% 2022-01-20T01:57:50.8411017Z ParticleContainer::RedistributeCPU() 20 0.0008918 0.001839 0.002785 4.22% 2022-01-20T01:57:50.8411397Z OverrideSync_finish() 577 0.002233 0.002285 0.002337 3.54% 2022-01-20T01:57:50.8411764Z MLMG::mgVcycle_up::2 27 0.001114 0.001618 0.002122 3.21% 2022-01-20T01:57:50.8412151Z ParticleContainer::RedistributeMPI() 20 0.0002092 0.001142 0.002076 3.14% 2022-01-20T01:57:50.8412518Z FabArray::setVal() 1147 0.001655 0.001857 0.002058 3.12% 2022-01-20T01:57:50.8412900Z MLMG::mgVcycle_down::3 27 0.001312 0.001629 0.001947 2.95% 2022-01-20T01:57:50.8413272Z MLMG:computeResOfCorrection() 135 0.001656 0.00177 0.001884 2.85% 2022-01-20T01:57:50.8413653Z MLMG::mgVcycle_down::4 27 0.001285 0.001562 0.00184 2.78% 2022-01-20T01:57:50.8414029Z MLNodeTensorLaplacian::restriction() 135 0.001456 0.001644 0.001832 2.77% 2022-01-20T01:57:50.8414415Z MLMG::mgVcycle_up::3 27 0.001121 0.001456 0.001791 2.71% 2022-01-20T01:57:50.8414782Z MLMG::prepareForSolve() 10 0.00142 0.001559 0.001698 2.57% 2022-01-20T01:57:50.8415158Z WarpX::SyncRho() 10 0.001513 0.001603 0.001694 2.56% 2022-01-20T01:57:50.8415526Z MLMG::mgVcycle_up::4 27 0.001142 0.001396 0.00165 2.50% 2022-01-20T01:57:50.8416191Z MLMG::mgVcycle_bottom 27 1.95e-05 0.0007837 0.001548 2.34% 2022-01-20T01:57:50.8416723Z MLMG::actualBottomSolve() 27 7e-06 0.0007704 0.001534 2.32% 2022-01-20T01:57:50.8417110Z MLNodeTensorLaplacian::Fapply() 200 0.001317 0.001404 0.001491 2.26% 2022-01-20T01:57:50.8417540Z MLCGSolver::bicgstab 13 0 0.0007143 0.001429 2.16% 2022-01-20T01:57:50.8417924Z MLNodeTensorLaplacian::define() 10 0.001124 0.001236 0.001349 2.04% 2022-01-20T01:57:50.8418295Z FabArrayBase::getFB() 2438 0.0007392 0.0008529 0.0009666 1.46% 2022-01-20T01:57:50.8418677Z MLMG::computeMLResidual() 10 0.0004118 0.0006474 0.0008829 1.34% 2022-01-20T01:57:50.8419040Z MLMG::computeResidual() 27 0.0008741 0.0008781 0.000882 1.33% 2022-01-20T01:57:50.8419474Z MLNodeTensorLaplacian::prepareForSolve() 10 0.0006107 0.0006943 0.0007778 1.18% 2022-01-20T01:57:50.8419847Z MLNodeLinOp::buildMasks() 10 0.0006032 0.0006869 0.0007706 1.17% 2022-01-20T01:57:50.8420231Z MLNodeTensorLaplacian::interpolation() 135 0.0006068 0.000645 0.0006832 1.03% 2022-01-20T01:57:50.8420606Z MLLinOp::define() 10 0.000598 0.0006274 0.0006568 0.99% 2022-01-20T01:57:50.8420986Z MLLinOp::defineGrids() 10 0.0005741 0.0006043 0.0006344 0.96% 2022-01-20T01:57:50.8421353Z FabArrayBase::getCPC() 803 0.0004443 0.0005182 0.0005921 0.90% 2022-01-20T01:57:50.8421739Z WarpXParticleContainer::DepositCharge 10 0.0005352 0.0005376 0.0005399 0.82% 2022-01-20T01:57:50.8422112Z WarpXCommUtil::FillBoundary 18 0.0002681 0.0003677 0.0004673 0.71% 2022-01-20T01:57:50.8422495Z FabArray::BuildMask() 60 0.0003283 0.0003889 0.0004495 0.68% 2022-01-20T01:57:50.8422872Z ablastr::particles::deposit_charge::Accumulate 68 0.0004275 0.0004277 0.0004278 0.65% 2022-01-20T01:57:50.8423259Z OwnerMask() 70 0.0003178 0.0003662 0.0004146 0.63% 2022-01-20T01:57:50.8423626Z MLLinOp::makeSubCommunicator() 10 0.0003509 0.0003784 0.0004058 0.61% 2022-01-20T01:57:50.8424005Z Filter::ApplyStencil(MultiFab) 10 0.0003854 0.0003888 0.0003922 0.59% 2022-01-20T01:57:50.8424372Z FabArrayBase::FB::FB() 81 0.0001305 0.0002344 0.0003382 0.51% 2022-01-20T01:57:50.8424754Z MLCGSolver::ParallelAllReduce 57 0 0.0001652 0.0003303 0.50% 2022-01-20T01:57:50.8425301Z DistributionMapping::SFCProcessorMapDoIt() 1 1.79e-05 0.0001628 0.0003077 0.47% 2022-01-20T01:57:50.8425861Z DistributionMapping::LeastUsedCPUs() 1 1.25e-05 0.0001566 0.0003007 0.46% 2022-01-20T01:57:50.8426233Z MLMG::ResNormInf() 37 0.0002409 0.0002503 0.0002596 0.39% 2022-01-20T01:57:50.8426619Z FabArrayBase::CPC::define() 102 0.0001188 0.0001831 0.0002474 0.37% 2022-01-20T01:57:50.8426988Z MultiFab::Xpay() 148 0.0001978 0.0002223 0.0002467 0.37% 2022-01-20T01:57:50.8427372Z PhysicalParticleContainer::Evolve() 9 0.0002077 0.00021 0.0002123 0.32% 2022-01-20T01:57:50.8427753Z WarpX::ComputeSpaceChargeField::reset_fields 9 0.0001477 0.0001488 0.0001498 0.23% 2022-01-20T01:57:50.8428153Z PhysicalParticleContainer::Evolve::GatherAndPush 68 0.0001247 0.0001299 0.0001351 0.20% 2022-01-20T01:57:50.8428527Z WarpX::PrintGlobalWarnings 1 0.0001078 0.0001163 0.0001247 0.19% 2022-01-20T01:57:50.8429072Z CGSolver::sxay() 30 0 5.55e-05 0.000111 0.17% 2022-01-20T01:57:50.8429608Z FabArray::setVal(val, thecmd, scomp, ncomp) 60 9.01e-05 9.355e-05 9.7e-05 0.15% 2022-01-20T01:57:50.8430474Z MultiFab::LinComb() 30 0 4.25e-05 8.5e-05 0.13% 2022-01-20T01:57:50.8431089Z CoarsenIO::Coarsen() 2 7.37e-05 7.445e-05 7.52e-05 0.11% 2022-01-20T01:57:50.8431716Z MultiFab::Dot() 30 0 3.69e-05 7.38e-05 0.11% 2022-01-20T01:57:50.8432329Z MultiFab::Multiply() 30 0 3.45e-05 6.9e-05 0.10% 2022-01-20T01:57:50.8432956Z MLMG::MLResNormInf() 10 5.36e-05 5.38e-05 5.4e-05 0.08% 2022-01-20T01:57:50.8433572Z MLLinOp::makeAgglomeratedDMap 10 5.32e-05 5.325e-05 5.33e-05 0.08% 2022-01-20T01:57:50.8434284Z PhysicalParticleContainer::PushP() 2 4.71e-05 4.805e-05 4.9e-05 0.07% 2022-01-20T01:57:50.8434912Z ParticleContainer::WriteParticles() 1 3.79e-05 4.25e-05 4.71e-05 0.07% 2022-01-20T01:57:50.8435549Z MLMG::MLRhsNormInf() 10 4.54e-05 4.555e-05 4.57e-05 0.07% 2022-01-20T01:57:50.8436169Z WarpXParticleContainer::ApplyBoundaryConditions() 9 3.9e-05 4.02e-05 4.14e-05 0.06% 2022-01-20T01:57:50.8436810Z ParticleContainer::copyParticles 2 3.82e-05 3.95e-05 4.08e-05 0.06% 2022-01-20T01:57:50.8437538Z makeSFC 40 3.7e-05 3.715e-05 3.73e-05 0.06% 2022-01-20T01:57:50.8438862Z ParticleContainer::addParticles 2 3.54e-05 3.625e-05 3.71e-05 0.06% 2022-01-20T01:57:50.8439491Z FabArray::mult() 10 3.01e-05 3.06e-05 3.11e-05 0.05% 2022-01-20T01:57:50.8440122Z MultiFab::Copy() 10 2.68e-05 2.72e-05 2.76e-05 0.04% 2022-01-20T01:57:50.8440731Z RedistributeMPI_locate 8 1.39e-05 1.755e-05 2.12e-05 0.03% 2022-01-20T01:57:50.8441369Z PhysicalParticleContainer::ConvertUnits() 4 1.89e-05 1.985e-05 2.08e-05 0.03% 2022-01-20T01:57:50.8442006Z ablastr::particles::deposit_charge::ChargeDeposition 68 1.84e-05 1.915e-05 1.99e-05 0.03% 2022-01-20T01:57:50.8442659Z DistributionMapping::Distribute() 41 1.36e-05 1.405e-05 1.45e-05 0.02% 2022-01-20T01:57:50.8443284Z MultiParticleContainer::doQedEvents() 9 1.17e-05 1.22e-05 1.27e-05 0.02% 2022-01-20T01:57:50.8443916Z RedistributeMPI_copy 8 1.22e-05 1.22e-05 1.22e-05 0.02% 2022-01-20T01:57:50.8444568Z WarpX::UpdateAuxilaryData() 13 7.6e-06 7.8e-06 8e-06 0.01% 2022-01-20T01:57:50.8445115Z WarpX::RecordWarning 2 5.1e-06 5.85e-06 6.601e-06 0.01% 2022-01-20T01:57:50.8445642Z MLMG::buildFineMask() 10 5.3e-06 5.45e-06 5.6e-06 0.01% 2022-01-20T01:57:50.8446192Z MultiParticleContainer::doFieldIonization() 9 3.9e-06 4.6e-06 5.3e-06 0.01% 2022-01-20T01:57:50.8446730Z MultiParticleContainer::doCollisions() 9 3.4e-06 3.85e-06 4.3e-06 0.01% 2022-01-20T01:57:50.8447281Z MultiParticleContainer::doQedBreitWheeler() 9 3.5e-06 3.9e-06 4.3e-06 0.01% 2022-01-20T01:57:50.8447820Z MultiParticleContainer::doQedQuantumSync() 9 2.7e-06 2.85e-06 3e-06 0.00% 2022-01-20T01:57:50.8448372Z MultiParticleContainer::doQEDSchwinger() 9 2.1e-06 2.25e-06 2.4e-06 0.00% 2022-01-20T01:57:50.8448917Z PhysicalParticleContainer::AddParticles() 2 1e-06 1.1e-06 1.2e-06 0.00% 2022-01-20T01:57:50.8449466Z BilinearFilter::ComputeStencils() 1 1e-06 1.1e-06 1.2e-06 0.00% 2022-01-20T01:57:50.8450001Z ParticleContainer::clearParticles() 2 9e-07 1e-06 1.1e-06 0.00% 2022-01-20T01:57:50.8450621Z ----------------------------------------------------------------------------------------------------- 2022-01-20T01:57:50.8450800Z 2022-01-20T01:57:50.8451103Z AMReX (22.01-29-g812836f08a75) finalized 2022-01-20T02:02:15.5103717Z 2022-01-20T02:02:15.5106231Z �[33m WARNING: Test stderr:�[0m 2022-01-20T02:02:15.5107390Z Traceback (most recent call last): 2022-01-20T02:02:15.5108471Z File "PICMI_inputs_2d.py", line 143, in <module> 2022-01-20T02:02:15.5110087Z assert (sim.extension.get_particle_count('electrons') == 270 / (2 - args.unique)) 2022-01-20T02:02:15.5112980Z AssertionError 2022-01-20T02:02:15.5113893Z Traceback (most recent call last): 2022-01-20T02:02:15.5114799Z File "PICMI_inputs_2d.py", line 143, in <module> 2022-01-20T02:02:15.5116389Z assert (sim.extension.get_particle_count('electrons') == 270 / (2 - args.unique)) 2022-01-20T02:02:15.5117638Z AssertionError 2022-01-20T02:02:15.5119075Z -------------------------------------------------------------------------- 2022-01-20T02:02:15.5120079Z Primary job terminated normally, but 1 process returned 2022-01-20T02:02:15.5121417Z a non-zero exit code. Per user-direction, the job has been aborted. 2022-01-20T02:02:15.5122822Z -------------------------------------------------------------------------- 2022-01-20T02:02:15.5124255Z -------------------------------------------------------------------------- 2022-01-20T02:02:15.5125734Z mpiexec detected that one or more processes exited with non-zero status, thus causing 2022-01-20T02:02:15.5126848Z the job to be terminated. The first process to do so was: 2022-01-20T02:02:15.5127478Z 2022-01-20T02:02:15.5128173Z Process name: [[18184,1],1] 2022-01-20T02:02:15.5128941Z Exit code: 1 2022-01-20T02:02:15.5130179Z -------------------------------------------------------------------------- 2022-01-20T02:02:15.5130830Z 2022-01-20T02:02:15.5131512Z Execution time: 1.610 s 2022-01-20T02:02:15.5132294Z archiving the output... 2022-01-20T02:02:15.5133053Z creating problem test report ... 2022-01-20T02:02:15.5134237Z �[31mPython_particle_attr_access FAILED�[0m
It looks like sim.extension.get_particle_count('electrons') is not stable? I think that's from using RNGs, e.g., I see np.random.rand being used.
sim.extension.get_particle_count('electrons')
Same applies likely to Python_particle_attr_access_unique.
Python_particle_attr_access_unique
The text was updated successfully, but these errors were encountered:
peterscherpelz
roelof-groenewald
Successfully merging a pull request may close this issue.
Finally, I tracked a fail of
Python_particle_attr_access
:)It looks like
sim.extension.get_particle_count('electrons')
is not stable?I think that's from using RNGs, e.g., I see np.random.rand being used.
Same applies likely to
Python_particle_attr_access_unique
.The text was updated successfully, but these errors were encountered: