iqbatch2 (1).qsub

#!/bin/bash

#PBS -N iqtreeLUCA_array

#PBS -l nodes=1:ppn=16,walltime=216:00:00
#PBS -nt AUTO

#PBS -t 101-200

cd $PBS_O_WORKDIR
echo "The Array ID is: ${PBS_ARRAYID}"

module load /cm/shared/modulefiles/apps/iqtree-1.6.3


###cd /panfs/panasas01/bisc/em16077/iqtree/data

###specify your command line, including full paths (if not using a module, need to include the path to the executable):


time iqtree -s ${PBS_ARRAYID}_*.phy -m MFP -madd LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -bb 1000 -bnni -wbtl