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Genfam1hmmalignment.faa.iqtree
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IQ-TREE 1.6.10 built Feb 19 2019
Input file name: Genfam1hmmalignment.faa
User tree file name: pteryxroot.tre
Type of analysis: tree reconstruction
Random seed number: 473318
REFERENCES
----------
To cite IQ-TREE please use:
Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler, and Bui Quang Minh
(2015) IQ-TREE: A fast and effective stochastic algorithm for estimating
maximum likelihood phylogenies. Mol Biol Evol, 32:268-274.
https://doi.org/10.1093/molbev/msu300
SEQUENCE ALIGNMENT
------------------
Input data: 280 sequences with 483 amino-acid sites
Number of constant sites: 169 (= 34.9896% of all sites)
Number of invariant (constant or ambiguous constant) sites: 169 (= 34.9896% of all sites)
Number of parsimony informative sites: 194
Number of distinct site patterns: 387
SUBSTITUTION PROCESS
--------------------
Mixture model of substitution: MIX{LG+F+F,LG+FC60pi1,LG+FC60pi2,LG+FC60pi3,LG+FC60pi4,LG+FC60pi5,LG+FC60pi6,LG+FC60pi7,LG+FC60pi8,LG+FC60pi9,LG+FC60pi10,LG+FC60pi11,LG+FC60pi12,LG+FC60pi13,LG+FC60pi14,LG+FC60pi15,LG+FC60pi16,LG+FC60pi17,LG+FC60pi18,LG+FC60pi19,LG+FC60pi20,LG+FC60pi21,LG+FC60pi22,LG+FC60pi23,LG+FC60pi24,LG+FC60pi25,LG+FC60pi26,LG+FC60pi27,LG+FC60pi28,LG+FC60pi29,LG+FC60pi30,LG+FC60pi31,LG+FC60pi32,LG+FC60pi33,LG+FC60pi34,LG+FC60pi35,LG+FC60pi36,LG+FC60pi37,LG+FC60pi38,LG+FC60pi39,LG+FC60pi40,LG+FC60pi41,LG+FC60pi42,LG+FC60pi43,LG+FC60pi44,LG+FC60pi45,LG+FC60pi46,LG+FC60pi47,LG+FC60pi48,LG+FC60pi49,LG+FC60pi50,LG+FC60pi51,LG+FC60pi52,LG+FC60pi53,LG+FC60pi54,LG+FC60pi55,LG+FC60pi56,LG+FC60pi57,LG+FC60pi58,LG+FC60pi59,LG+FC60pi60}+G4
No Component Rate Weight Parameters
1 LG+F 1.0000 0.3664 LG+F
2 LG+FC60pi1 1.0000 0.0006 LG+FC60pi1
3 LG+FC60pi2 1.0000 0.0000 LG+FC60pi2
4 LG+FC60pi3 1.0000 0.0000 LG+FC60pi3
5 LG+FC60pi4 1.0000 0.0000 LG+FC60pi4
6 LG+FC60pi5 1.0000 0.0223 LG+FC60pi5
7 LG+FC60pi6 1.0000 0.0129 LG+FC60pi6
8 LG+FC60pi7 1.0000 0.0000 LG+FC60pi7
9 LG+FC60pi8 1.0000 0.0000 LG+FC60pi8
10 LG+FC60pi9 1.0000 0.0018 LG+FC60pi9
11 LG+FC60pi10 1.0000 0.0982 LG+FC60pi10
12 LG+FC60pi11 1.0000 0.0000 LG+FC60pi11
13 LG+FC60pi12 1.0000 0.0141 LG+FC60pi12
14 LG+FC60pi13 1.0000 0.0000 LG+FC60pi13
15 LG+FC60pi14 1.0000 0.0146 LG+FC60pi14
16 LG+FC60pi15 1.0000 0.0000 LG+FC60pi15
17 LG+FC60pi16 1.0000 0.0224 LG+FC60pi16
18 LG+FC60pi17 1.0000 0.0131 LG+FC60pi17
19 LG+FC60pi18 1.0000 0.0108 LG+FC60pi18
20 LG+FC60pi19 1.0000 0.0167 LG+FC60pi19
21 LG+FC60pi20 1.0000 0.0003 LG+FC60pi20
22 LG+FC60pi21 1.0000 0.0000 LG+FC60pi21
23 LG+FC60pi22 1.0000 0.0485 LG+FC60pi22
24 LG+FC60pi23 1.0000 0.0063 LG+FC60pi23
25 LG+FC60pi24 1.0000 0.0164 LG+FC60pi24
26 LG+FC60pi25 1.0000 0.0000 LG+FC60pi25
27 LG+FC60pi26 1.0000 0.0096 LG+FC60pi26
28 LG+FC60pi27 1.0000 0.0346 LG+FC60pi27
29 LG+FC60pi28 1.0000 0.0186 LG+FC60pi28
30 LG+FC60pi29 1.0000 0.0214 LG+FC60pi29
31 LG+FC60pi30 1.0000 0.0000 LG+FC60pi30
32 LG+FC60pi31 1.0000 0.0000 LG+FC60pi31
33 LG+FC60pi32 1.0000 0.0036 LG+FC60pi32
34 LG+FC60pi33 1.0000 0.0064 LG+FC60pi33
35 LG+FC60pi34 1.0000 0.0046 LG+FC60pi34
36 LG+FC60pi35 1.0000 0.0436 LG+FC60pi35
37 LG+FC60pi36 1.0000 0.0083 LG+FC60pi36
38 LG+FC60pi37 1.0000 0.0111 LG+FC60pi37
39 LG+FC60pi38 1.0000 0.0000 LG+FC60pi38
40 LG+FC60pi39 1.0000 0.0000 LG+FC60pi39
41 LG+FC60pi40 1.0000 0.0076 LG+FC60pi40
42 LG+FC60pi41 1.0000 0.0000 LG+FC60pi41
43 LG+FC60pi42 1.0000 0.0089 LG+FC60pi42
44 LG+FC60pi43 1.0000 0.0164 LG+FC60pi43
45 LG+FC60pi44 1.0000 0.0354 LG+FC60pi44
46 LG+FC60pi45 1.0000 0.0000 LG+FC60pi45
47 LG+FC60pi46 1.0000 0.0000 LG+FC60pi46
48 LG+FC60pi47 1.0000 0.0000 LG+FC60pi47
49 LG+FC60pi48 1.0000 0.0102 LG+FC60pi48
50 LG+FC60pi49 1.0000 0.0000 LG+FC60pi49
51 LG+FC60pi50 1.0000 0.0347 LG+FC60pi50
52 LG+FC60pi51 1.0000 0.0000 LG+FC60pi51
53 LG+FC60pi52 1.0000 0.0000 LG+FC60pi52
54 LG+FC60pi53 1.0000 0.0000 LG+FC60pi53
55 LG+FC60pi54 1.0000 0.0186 LG+FC60pi54
56 LG+FC60pi55 1.0000 0.0106 LG+FC60pi55
57 LG+FC60pi56 1.0000 0.0000 LG+FC60pi56
58 LG+FC60pi57 1.0000 0.0000 LG+FC60pi57
59 LG+FC60pi58 1.0000 0.0213 LG+FC60pi58
60 LG+FC60pi59 1.0000 0.0094 LG+FC60pi59
61 LG+FC60pi60 1.0000 0.0000 LG+FC60pi60
Model for mixture component 1: LG+F
State frequencies: (empirical counts from alignment)
pi(A) = 0.0913
pi(R) = 0.1022
pi(N) = 0.0314
pi(D) = 0.0443
pi(C) = 0.0051
pi(Q) = 0.0353
pi(E) = 0.0566
pi(G) = 0.0886
pi(H) = 0.0134
pi(I) = 0.0578
pi(L) = 0.0692
pi(K) = 0.0994
pi(M) = 0.0264
pi(F) = 0.0286
pi(P) = 0.0388
pi(S) = 0.0494
pi(T) = 0.0505
pi(W) = 0.0083
pi(Y) = 0.0318
pi(V) = 0.0719
Model of rate heterogeneity: Gamma with 4 categories
Gamma shape alpha: 0.8953
Category Relative_rate Proportion
1 0.1156 0.2500
2 0.4428 0.2500
3 0.9802 0.2500
4 2.4613 0.2500
Relative rates are computed as MEAN of the portion of the Gamma distribution falling in the category.
USER TREE
---------
Log-likelihood of the tree: -45010.2079 (s.e. 3392.8436)
Unconstrained log-likelihood (without tree): -2776.5844
Number of free parameters (#branches + #model parameters): 637
Akaike information criterion (AIC) score: 91294.4157
Corrected Akaike information criterion (AICc) score: 904106.4157
Bayesian information criterion (BIC) score: 93957.0863
**************************** WARNING ****************************
Number of parameters (K, model parameters and branch lengths): 637
Sample size (n, alignment length): 483
Given that K>=n, the parameter estimates might be inaccurate.
Thus, phylogenetic estimates should be interpreted with caution.
Ideally, it is desirable that n >> K. When selecting optimal models,
1. use AIC or BIC if n > 40K;
2. use AICc or BIC if 40K >= n > K;
3. be extremely cautious if n <= K
To improve the situation (3), consider the following options:
1. Increase the sample size (n)
2. Decrease the number of parameters (K) to be estimated. If
possible:
a. Remove the least important sequences from the alignment
b. Specify some of the parameter values for the substitution
model (e.g., the nucleotide or amino acid frequencies)
c. Specify some of the parameter values for the rates-across-
sites model (e.g., the shape parameter for the discrete
Gamma distribution, the proportion of invariable sites, or
the rates of change for different rate categories under
the FreeRate model)
Reference:
Burnham KR, Anderson DR (2002). Model Selection and Multimodel
Inference: A Practical Information-Theoretic Approach. Springer,
New York.
************************ END OF WARNING ***********************
Total tree length (sum of branch lengths): 137.7276
Sum of internal branch lengths: 38.8360 (28.1977% of tree length)
WARNING: 8 near-zero internal branches (<0.0021) should be treated with caution
Such branches are denoted by '**' in the figure below
NOTE: Tree is UNROOTED although outgroup taxon 'METHMIC14____WP-048120079.1' is drawn at root
+--METHMIC14____WP-048120079.1
| (Node1)
| +-----CPRKAZ2____KKT52954.1
| +--| (Node153)
| | +--CPRKAZ1____AKM84753.1
| +--| (Node152)
| | +------WIRTH1____OIP99172.1
| +--| (Node151)
| | +---------CPRPER1____OIO51906.1
| +--| (Node150)
| | | +---CPRSACC1____OIP86267.1
| | | +----| (Node155)
| | | | +--------CPRSACC2____OGL37775.1
| | +--| (Node154)
| | | +----CPRBERK8____OGD64887.1
| | | +--| (Node159)
| | | | +-------TERRCHLO1____WP_041454680.1
| | | +--| (Node158)
| | | | | +--------CPRPER2____OIO55511.1
| | | | +--| (Node160)
| | | | +-----CPRPARC1____KKQ64960.1
| | | +--| (Node157)
| | | | +------------CPRBERK7____OIP06883.1
| | +--| (Node156)
| | | +----CPRBERK5____OIN90317.1
| | +--| (Node161)
| | +---------CPRBERK9____OGD64365.1
| +--| (Node149)
| | | +----CPRBERK2____KKP89224.1
| | | +--| (Node163)
| | | | | +---------CPRBERK6____OIP06161.1
| | | | +--| (Node164)
| | | | +-------CPRBERK3____KKQ90386.1
| | +--| (Node162)
| | +-----------AQUI1____WP_012963220.1
| +--| (Node148)
| | | +-------CPRPARC16____OGM92637.1
| | | +--| (Node168)
| | | | | +-------CPRPARC4____OGG38666.1
| | | | +--| (Node169)
| | | | +----CPRPARC3____OGG37738.1
| | | +--| (Node167)
| | | | | +---CPRPARC5____OGG60006.1
| | | | | +--| (Node171)
| | | | | | +----CPRPARC8____KKU27188.1
| | | | +--| (Node170)
| | | | | +----CPRPARC11____OIO29437.1
| | | | | +--| (Node173)
| | | | | | +-----CPRPARC2____OGF73378.1
| | | | +--| (Node172)
| | | | +------CPRPARC12____OGI83554.1
| | | +--| (Node166)
| | | | | +------CPRPARC17____OGN05596.1
| | | | +--| (Node174)
| | | | +---CPRPARC6____WP_038322628.1
| | +--| (Node165)
| | | +----------GRACI1____OIO75870.1
| | | +--| (Node176)
| | | | | +------CPRPARC9____OGI21360.1
| | | | +--| (Node177)
| | | | +----CPRPARC10____KKQ44510.1
| | +--| (Node175)
| | | +-----CPRPARC14____OGL90955.1
| | | +------| (Node179)
| | | | +-----CPRPARC13____OGL87599.1
| | +--| (Node178)
| | +-------CPRPARC15____OGM01040.1
| +**| (Node147)
| | +-------------CPRPARC7____KKU07252.1
| +--| (Node146)
| | | +------CPRMICR11____OGY23762.1
| | | +--| (Node185)
| | | | | +--CPRMICR8____OGY23333.1
| | | | +--| (Node186)
| | | | +--CPRMICR12____OGY24213.1
| | | +--| (Node184)
| | | | | +-------CPRMICR9____OGH17895.1
| | | | | +--| (Node188)
| | | | | | | +----CPRMICR2____AKM79703.1
| | | | | | | +--| (Node193)
| | | | | | | | +------CPRMICR15____KKR52926.1
| | | | | | | +--| (Node192)
| | | | | | | | +--------CPRMICR1____OGD10246.1
| | | | | | | +--| (Node191)
| | | | | | | | +-----CPRMICR7____KKU26352.1
| | | | | | | +--| (Node190)
| | | | | | | | +---------CPRMICR14____KKQ31303.1
| | | | | | +--| (Node189)
| | | | | | +-----CPRMICR16____OGM30273.1
| | | | +--| (Node187)
| | | | +--------CPRMICR10____OIO45070.1
| | | +--| (Node183)
| | | | | +----CPRMICR5____OGE34670.1
| | | | +--| (Node194)
| | | | | +-----CPRMICR13____OGK55200.1
| | | | | +--| (Node196)
| | | | | | +------CPRMICR6____KKS84615.1
| | | | +--| (Node195)
| | | | +-------CPRMICR3____OGD79142.1
| | | +--| (Node182)
| | | | +----CPRMICR4____OGD85749.1
| | | +--| (Node181)
| | | | | +------------CPRWWE1____OGC59791.1
| | | | +--| (Node197)
| | | | +---------CPRDOJK1____KKQ36270.1
| | +--| (Node180)
| | +---------CPRBERK4____AKM82746.1
| +--| (Node145)
| | | +----PROZ1____WP_009849236.1
| | | +--| (Node203)
| | | | +------TERRDEI1____WP_011530861.1
| | | +--| (Node202)
| | | | | +---THERMTO1____WP_012744853.1
| | | | +--| (Node204)
| | | | +-------SPIR2____WP_012388378.1
| | | +--| (Node201)
| | | | +------FUSO1____NP_603235.1
| | | +--| (Node200)
| | | | | +--PROB2____WP_003059002.1
| | | | | +--| (Node210)
| | | | | | | +--PROB5____WP_027469997.1
| | | | | | | +--| (Node213)
| | | | | | | | +--PROB3____WP_013292340.1
| | | | | | | +--| (Node212)
| | | | | | | | +--PROB4____WP_013440884.1
| | | | | | +--| (Node211)
| | | | | | +--PROB1____WP_003814889.1
| | | | | +--| (Node209)
| | | | | | +--PORG10____WP_091334577.1
| | | | | +--| (Node208)
| | | | | | +--PROO1____WP_028990533.1
| | | | | +--| (Node207)
| | | | | | | +--PORG9____WP_041394537.1
| | | | | | | +--| (Node219)
| | | | | | | | +--PORG4____WP_026821376.1
| | | | | | | +--| (Node218)
| | | | | | | | | +--PORG1____WP_027940135.1
| | | | | | | | +--| (Node220)
| | | | | | | | +---PORG6____WP_023495188.1
| | | | | | | +--| (Node217)
| | | | | | | | +--PORG8____WP_026471335.1
| | | | | | | +--| (Node216)
| | | | | | | | +--PORG2____WP_035515865.1
| | | | | | | +--| (Node215)
| | | | | | | | +--PORG7____WP_028672248.1
| | | | | | +--| (Node214)
| | | | | | +--PORG3____WP_018716434.1
| | | | | +--| (Node206)
| | | | | | +---PORG5____WP_045100193.1
| | | | +--| (Node205)
| | | | +------CHRY1____WP_027390750.1
| | | +--| (Node199)
| | | | | +--TERRFIR3____WP_010017477.1
| | | | | +--| (Node226)
| | | | | | +--TERRFIR4____WP_002262992.1
| | | | | +--| (Node225)
| | | | | | +--TERRFIR1____WP_000079988.1
| | | | | +--| (Node224)
| | | | | | | +--TERRCYA3____WP_006634975.1
| | | | | | | +--| (Node231)
| | | | | | | | +--TERRCYA2____WP_015203272.1
| | | | | | | +--| (Node230)
| | | | | | | | +--TERRCYA5____NP_680900.1
| | | | | | | +------| (Node229)
| | | | | | | | +--TERRCYA4____WP_015195205.1
| | | | | | | +--| (Node228)
| | | | | | | | +------TERRTEN1____WP_011183390.1
| | | | | | +--| (Node227)
| | | | | | +--TERRFIR2____WP_022794501.1
| | | | | +--| (Node223)
| | | | | | | +--TERRFIR5____WP_023388352.1
| | | | | | +--| (Node232)
| | | | | | +--TERRFIR6____WP_014262207.1
| | | | | +--| (Node222)
| | | | | | | +--TERRACT5____WP_004268556.1
| | | | | | | +--| (Node235)
| | | | | | | | +--------TERRACT2____WP_021012131.1
| | | | | | | +--| (Node234)
| | | | | | | | | +--TERRACT7____WP_038503141.1
| | | | | | | | | +--| (Node237)
| | | | | | | | | | +--TERRACT3____WP_026935930.1
| | | | | | | | +--| (Node236)
| | | | | | | | +--TERRACT1____WP_013170535.1
| | | | | | +-----| (Node233)
| | | | | | +--TERRACT4____WP_022910722.1
| | | | +--| (Node221)
| | | | | +--TERRFIR7____WP_018249324.1
| | | | | +--| (Node239)
| | | | | | | +--TERRACT8____WP_019128897.1
| | | | | | +--| (Node240)
| | | | | | +--TERRACT6____WP_013980700.1
| | | | +--| (Node238)
| | | | +--TERRFIR8____WP_004695188.1
| | +--| (Node198)
| | +---------AMIN1____OGD13483.1
| +--| (Node144)
| | | +-----PVCCHLA2____CAH63970.1
| | +--------| (Node241)
| | +-----PVCCHLA1____OGN67495.1
| +--| (Node143)
| | | +--PROA3____OIQ05223.1
| | | +--| (Node251)
| | | | +--PROA5____WP_014745306.1
| | | +--| (Node250)
| | | | +--PROA4____ABI61864.1
| | | +--| (Node249)
| | | | +--PROA1____WP_020399056.1
| | | +--| (Node248)
| | | | +--PROA7____WP_010407797.1
| | | +--| (Node247)
| | | | +--PROA2____WP_014130336.1
| | | +--| (Node246)
| | | | +--------PROA6____WP_010265839.1
| | | +--| (Node245)
| | | | | +------DEFER1____WP_013011539.1
| | | | +--| (Node252)
| | | | +---------PROE1____WP_084021775.1
| | | +--| (Node244)
| | | | +---PROD3____WP_011552084.1
| | | +--| (Node243)
| | | | | +----ACID1____OFV89354.1
| | | | +--| (Node253)
| | | | | +------FCBGEM1____OGU26403.1
| | | | | +--| (Node255)
| | | | | | +--FCBZIX1____KPL04261.1
| | | | +--| (Node254)
| | | | +------SPIR1____WP_013113494.1
| | +**| (Node242)
| | | +------NITROR2____WP_013249281.1
| | | +--| (Node261)
| | | | +-------TERRCHLO3____OGN95068.1
| | | +--| (Node260)
| | | | +-------TERRMEL1____AOR38500.1
| | | +--| (Node259)
| | | | | +--------FCBCHLO1____WP_012499085.1
| | | | | +--| (Node264)
| | | | | | | +--FCBBAC6____EKF54729.1
| | | | | | | +--| (Node266)
| | | | | | | | +----FCBBAC5____WP_028121231.1
| | | | | | +--| (Node265)
| | | | | | | +--FCBBAC3____WP_014020963.1
| | | | | | | +--| (Node269)
| | | | | | | | +--FCBBAC4____WP_009035633.1
| | | | | | | +--| (Node268)
| | | | | | | | | +--FCBBAC2____WP_010664804.1
| | | | | | | | +--| (Node270)
| | | | | | | | +---FCBBAC1____WP_005791749.1
| | | | | | +--| (Node267)
| | | | | | +-----FCBBAC8____WP_016196062.1
| | | | | +--| (Node263)
| | | | | | +-----FCBIG1____OGU19346.1
| | | | +--| (Node262)
| | | | +--------FCBBAC7____WP_020404605.1
| | | +--| (Node258)
| | | | +---------PVCOMN1____OIO38018.1
| | | +--| (Node257)
| | | | +----PROD4____WP_041584596.1
| | +--| (Node256)
| | +-----------PVCLEN1____OGV48579.1
| +--| (Node142)
| | | +-----MODU1____GAK56328.1
| | | +--| (Node273)
| | | | | +---THERMODES1____WP_013907982.1
| | | | +--| (Node274)
| | | | +--AQUI2____ADU96351.1
| | | +--| (Node272)
| | | | +-----NITROR1____OGW50342.1
| | +--| (Node271)
| | | +-----ACID4____WP_005035658.1
| | | +--| (Node276)
| | | | | +--ACID2____OFW02065.1
| | | | +--| (Node277)
| | | | +-----ACID3____WP_014267734.1
| | +--| (Node275)
| | | +-----PROD1____WP_014242868.1
| | +--| (Node278)
| | +-----PROD2____WP_006964688.1
| +---------------| (Node141)
| | +-------SYNE1____YP_003318030.1
| +--| (Node140)
| | +-----KOR1____Kcryp-Kcr-1588-AA-170291200-YP-001738016.1
| +--| (Node138)
| | | +--AUNC2____gi_1370716986_gb_PSN88901.1_
| | +---| (Node139)
| | +--AUNC1____gi_1370739337_gb_PSO09375.1_
| +--| (Node105)
| | | +------DPANN20____Nequi-NEQ446-AA-41615231-NP-963729.1
| | | +--| (Node110)
| | | | | +**DPANN21____gi_485654978_gb_EOD42768.1_
| | | | +--------| (Node111)
| | | | +--DPANN22____AMD29689.1
| | | +--| (Node109)
| | | | | +--DPANN15____gi_269986577_gb_EEZ92859.1_
| | | | | +-------------| (Node114)
| | | | | | +--DPANN16____Pacid-BJBARM5-0749-AA-290559183-EFD92540.1
| | | | | +--| (Node113)
| | | | | | | +---DPANN7____gi_1209161928_gb_OWP53842.1_
| | | | | | | +---| (Node116)
| | | | | | | | +--DPANN6____Macid-UNLARM2-0923-AA-255513543-EET89809.1
| | | | | | +-------| (Node115)
| | | | | | +--DPANN8____gi_1214173088_gb_ASI13363.1_
| | | | +--| (Node112)
| | | | | +-----DPANN3____gi_1276421034_gb_PIN85825.1_
| | | | +---| (Node117)
| | | | +--DPANN4____AR10-GW2011-AR10-complete-1-862
| | | +--| (Node108)
| | | | | +----DPANN14____AR6-gwa2-scaffold-5107-30
| | | | | +--| (Node120)
| | | | | | | +-------DPANN12____AR13-gwa2-scaffold-4294-3
| | | | | | +------| (Node121)
| | | | | | +--DPANN13____AR1-GW2011-AR1-4-18
| | | | | +--| (Node119)
| | | | | | | +----DPANN17____AR15-GW2011-AR15-1-364
| | | | | | +--| (Node122)
| | | | | | +----DPANN18____AR20-GW2011-AR20-complete-1-798
| | | | +--| (Node118)
| | | | +------------------DPANN5____gi_1277911660_gb_PIV13778.1_
| | | +--| (Node107)
| | | | | +--ABOON1____Aboon-Aboo-1476-AA-289597148-YP-003483844.1
| | | | | +--| (Node126)
| | | | | | | +--THERMPLAS5____WP-009886729.1
| | | | | | | +--| (Node131)
| | | | | | | | +--THERMPLAS4____WP-048100781.1
| | | | | | | +--| (Node130)
| | | | | | | | +--THERMPLAS6____WP-011177125.1
| | | | | | | +--| (Node129)
| | | | | | | | +--THERMPLAS9____gi_1209164552_gb_OWP56443.1_
| | | | | | | +---| (Node128)
| | | | | | | | +--THERMPLAS7____WP-010917394.1
| | | | | | +--| (Node127)
| | | | | | | +--THERMPLAS2____gi_509092941_gb_AGN26959.1_
| | | | | | | +--| (Node133)
| | | | | | | | +--THERMPLAS1____Mlumi-gi_518007558_ref_WP-019177766.1_
| | | | | | +--| (Node132)
| | | | | | +--THERMPLAS3____gi_851215087_ref_WP-048111166.1_
| | | | | +--| (Node125)
| | | | | | +---EURYUNC2____gi_1101739036_gb_OIR22458.1_
| | | | | +--| (Node124)
| | | | | | | +--HADE2____KUO39451.1
| | | | | | | +--| (Node135)
| | | | | | | | +--HADE1____gi_974127774_gb_KUO42333.1_
| | | | | | +--| (Node134)
| | | | | | +----EURYUNC3____gi_985664199_gb_KXA95886.1_
| | | | +--| (Node123)
| | | | | +--ARCH2____WP-015590248.1
| | | | +--| (Node136)
| | | | +--ARCH1____gi_2649458_gb_AAB90113.1_
| | +--| (Node106)
| | | +---------------AIG1____Csubt-CSUB-C0320-AA-557693757-YP-008796811.1
| | +--| (Node137)
| | +----CREN13____Tpend-Tpen-0277-AA-119719195-YP-919690.1
| +--| (Node73)
| | | +--VERS2____ACCABHEM-00293
| | | +---| (Node76)
| | | | +--VERS1____DHPNFBIM-00179
| | | +--| (Node75)
| | | | | +----CREN10____Ssolf-SSO0068-AA-15897035-NP-341640.1
| | | | | +--| (Node83)
| | | | | | | +--CREN6____Ihosp-Igni-0186-AA-156936981-YP-001434777.1
| | | | | | +---| (Node84)
| | | | | | +--CREN7____WP-075049636.1
| | | | | +--| (Node82)
| | | | | | +--CREN4____Hbuty-Hbut-0533-AA-124027418-YP-001012738.1
| | | | | +--| (Node81)
| | | | | | | +-----CREN9____Fervi-gi_385805505_ref_YP-005841903.1_
| | | | | | +--| (Node85)
| | | | | | | +**CREN2____WP-022541837.1
| | | | | | | +--| (Node87)
| | | | | | | | +--CREN3____TCAper001147-Aeropyrum-pernix-K1
| | | | | | +--| (Node86)
| | | | | | +---CREN1____WP-048813007.1
| | | | | +--| (Node80)
| | | | | | +----CREN5____Iaggr-Igag-0196-AA-305662637-YP-003858925.1
| | | | | +--| (Node79)
| | | | | | +--CREN8____Smari-Smar-0818-AA-126465718-YP-001040827.1
| | | | | +--| (Node78)
| | | | | | | +--CREN12____Paero-PAE0674-AA-18312094-NP-558761.1
| | | | | | +--| (Node88)
| | | | | | +--CREN11____WP-012186613.1
| | | | +**| (Node77)
| | | | | +**THAUM2____gi_407045572_gb_AFS80325.1_
| | | | | +--| (Node94)
| | | | | | +--THAUM4____gi_329137211_gb_EGG41500.1_
| | | | | +**| (Node93)
| | | | | | | +**THAUM9____gi_675346204_gb_KFM19155.1_
| | | | | | +**| (Node95)
| | | | | | +**THAUM3____Nmari-Nmar-0425-AA-161527933-YP-001581759.1
| | | | | +-----| (Node92)
| | | | | | | +--THAUM1____Csymb-CENSYa-1489-AA-118576672-YP-876415.1
| | | | | | +--| (Node96)
| | | | | | +--THAUM5____gi_1056525836_ref_WP-067959346.1_
| | | | | +--| (Node91)
| | | | | | | +--THAUM7____gi_937514458_gb_ALI34945.1_
| | | | | | | +--| (Node98)
| | | | | | | | +--THAUM6____Ngarg-Ngar-c23930-AA-408404992-YP-006862975.1
| | | | | | +--| (Node97)
| | | | | | +--THAUM8____gi_1337718750_ref_WP-103287603.1_
| | | | | +--| (Node90)
| | | | | | | +------THAUM12____TTTFn1000837-Thaumarchaeota-Fn1
| | | | | | +--| (Node99)
| | | | | | +---THAUM11____TTTBS4001139-Thaumarchaeota-archaeon-BS4
| | | | +--| (Node89)
| | | | +----TACKO1____gi_1249059196_gb_PCN51136.1_
| | +--| (Node74)
| | | +--ASG4____OLS17871.1
| | | +**| (Node101)
| | | | | +-----BATH3____gi_921069029_gb_KON29679.1_
| | | | +--| (Node102)
| | | | | +---BATH2____gi_921074210_gb_KON34304.1_
| | | | +--| (Node103)
| | | | +--BATH4____gi_939573137_gb_KPV63013.1_
| | +--| (Node100)
| | | +----------ASG1____OLS24587.1
| | +--| (Node104)
| | +------ASG3____KKK46444.1
| +--| (Node72)
| | +------ASG5____OLS26631.1
| +--| (Node34)
| | | +--THERMCOC4____Tkoda-TK1500-AA-57641435-YP-183913.1
| | | +--| (Node39)
| | | | | +--THERMCOC3____WP-010885704.1
| | | | | +--| (Node41)
| | | | | | +--THERMCOC2____WP-010867657.1
| | | | +--| (Node40)
| | | | +--THERMCOC1____WP-011012791.1
| | | +--| (Node38)
| | | | | +--METHCOC2____WP-007044109.1
| | | | | +--| (Node43)
| | | | | | +--METHCOC1____Mjann-MJ-0195-AA-15668367-NP-247163.1
| | | | +--| (Node42)
| | | | | +--METHCOC4____WP-018154451.1
| | | | +--| (Node44)
| | | | +--METHCOC3____WP-011171269.1
| | | +--| (Node37)
| | | | | +--THEI2____gi_1008855596_gb_KYK38189.1_
| | | | | +--| (Node46)
| | | | | | +--THEI1____gi_1008845239_gb_KYK28346.1_
| | | | +--| (Node45)
| | | | +--METHMIC23____gi_1004826795_gb_KYC51882.1_
| | | +--| (Node36)
| | | | | +--DPANN11____gi_1078648311_gb_AOV95429.1_
| | | | | +--| (Node49)
| | | | | | +--DPANN9____Nj743-J07AB43-07240-AA-339757479-EGQ42736.1
| | | | | +-------| (Node48)
| | | | | | +--DPANN10____Nsali-J07AB56-07220-AA-339756411-EGQ39994.1
| | | | +--| (Node47)
| | | | | +**DPANN24____scaffold-7131-8
| | | | | +--| (Node53)
| | | | | | +**DPANN23____PJC15831.1
| | | | | +-------| (Node52)
| | | | | | +--DPANN26____MSIBFv1-A1530021_ID_16557079_rps_
| | | | | +--| (Node51)
| | | | | | | +----DPANN25____ODS36284.1
| | | | | | +--| (Node54)
| | | | | | +--DPANN27____OYT54508.1
| | | | +--| (Node50)
| | | | | +**DPANN1____PIY36118.1
| | | | +-------| (Node55)
| | | | +**DPANN2____gi_1277976528_gb_PIV69428.1_
| | +--| (Node35)
| | | +--METHBAC16____gi_1067220036_gb_OED29751.1_
| | | +--| (Node64)
| | | | +--METHBAC15____WP-011406453.1
| | | +--| (Node63)
| | | | +--METHBAC14____gi_1240222103_gb_PAV06633.1_
| | | +--| (Node62)
| | | | | +**METHBAC11____WP-058739649.1
| | | | | +--| (Node66)
| | | | | | | +--METHBAC10____gi_757140299_ref_WP-042694541.1_
| | | | | | +--| (Node67)
| | | | | | +--METHBAC13____WP-004033272.1
| | | | +--| (Node65)
| | | | +--METHBAC12____WP-012955713.1
| | | +--| (Node61)
| | | | +--METHBAC9____WP-066973058.1
| | | +--| (Node60)
| | | | +--METHBAC7____gi_1168041138_gb_OQD59064.1_
| | | +--| (Node59)
| | | | +--METHBAC8____WP-067257208.1
| | | +--| (Node58)
| | | | | +--METHBAC1____gi_1240218670_gb_PAV03438.1_
| | | | +--| (Node68)
| | | | | +--METHBAC2____WP-004030358.1
| | | | | +--| (Node70)
| | | | | | +--METHBAC4____gi_1297875626_gb_AUB60040.1_
| | | | +--| (Node69)
| | | | +--METHBAC3____gi_973120164_gb_KUK75469.1_
| | | +--| (Node57)
| | | | | +--METHBAC6____Mtherm-MTH39-AA-15678069-NP-275183.1
| | | | +--| (Node71)
| | | | +--METHABC____WP-013295348.1
| | +--| (Node56)
| | +--METHBAC17____WP-013413965.1
| +--| (Node32)
| | | +--METHPY1____Mkand-MK1477-AA-20094913-NP-614760.1
| | +--| (Node33)
| | +--METHPY2____gi_1209289739_ref_WP-088336431.1_
| +--| (Node31)
| | +-------ASG2____OLS27733.1
| +--| (Node29)
| | | +--THERMPLAS8____gi_471674883_gb_EMR74413.1_
| | +--| (Node30)
| | +-------EURYUNC1____UnEury2-gi_374723771_gb_EHR75851.1_
| +--| (Node28)
| | +---METHMIC20____gi_1081853615_gb_OFV68431.1_
| +--| (Node27)
| | +----METHMIC22____gi_1232008032_gb_OYT67395.1_
| +--| (Node16)
| | | +--HALO5____WP-004043023.1
| | | +--| (Node23)
| | | | | +--HALO7____WP-005579709.1
| | | | +--| (Node24)
| | | | +--HALO6____WP-005557947.1
| | | +--| (Node22)
| | | | | +--HALO1____WP-011323136.1
| | | | +--| (Node25)
| | | | +--HALO3____WP-010902818.1
| | | +--| (Node21)
| | | | | +--HALO4____WP-015763543.1
| | | | +--| (Node26)
| | | | +**HALO2____WP-004516798.1
| | | +--| (Node20)
| | | | +---METHMIC17____WP-042685564.1
| | | +--| (Node19)
| | | | +--METHMIC7____gi_630830353_gb_KCZ72064.1_
| | | +--| (Node18)
| | | | +----METHMIC18____gi_1232001974_gb_OYT61814.1_
| | +--| (Node17)
| | +------METHONAT1____WP-086637017.1
| +--| (Node12)
| | | +--METHMIC5____WP-014866480.1
| | | +--| (Node14)
| | | | +--METHMIC6____WP-048067601.1
| | +--| (Node13)
| | | +--METHMIC3____gi_1240225289_gb_PAV09510.1_
| | +--| (Node15)
| | +**METHMIC4____WP-011833613.1
| +--| (Node10)
| | | +--METHMIC9____gi_116665245_gb_ABK14272.1_
| | +--| (Node11)
| | +--METHMIC8____WP-013720017.1
| +--| (Node9)
| | +--METHMIC21____gi_1343183869_gb_PPA80354.1_
| +--| (Node7)
| | | +--METHMIC10____WP-048193212.1
| | +--| (Node8)
| | +--METHMIC11____WP-013037982.1
| +--| (Node5)
| | | +--METHMIC2____Mpalu-MCP-1645-AA-282164315-YP-003356700.1
| | +--| (Node6)
| | +--METHMIC1____WP-012037125.1
| +**| (Node4)
| | +**METHMIC12____WP-011020646.1
| +--| (Node3)
| | +--METHMIC15____Mmaze-MM-1757-AA-21227859-NP-633781.1
+**| (Node2)
| +--METHMIC16____gi_1240229756_gb_PAV13340.1_
|
+--METHMIC13____WP-011306431.1
Tree in newick format:
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TIME STAMP
----------
Date and time: Fri Sep 13 12:39:58 2019
Total CPU time used: 372.609 seconds (0h:6m:12s)
Total wall-clock time used: 389.306 seconds (0h:6m:29s)