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Genfam1hmmalignment.faa.log
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IQ-TREE multicore version 1.6.10 for Linux 64-bit built Feb 19 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.
Host: amado.bio.bris.ac.uk (AVX2, FMA3, 251 GB RAM)
Command: iqtree -s Genfam1hmmalignment.faa -m 6.7b -asr -te pteryxroot.tre -redo
Seed: 636883 (Using SPRNG - Scalable Parallel Random Number Generator)
Time: Fri Sep 13 13:50:42 2019
Kernel: AVX+FMA - 1 threads (40 CPU cores detected)
HINT: Use -nt option to specify number of threads because your CPU has 40 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.
Reading alignment file Genfam1hmmalignment.faa ... Fasta format detected
Alignment most likely contains protein sequences
Alignment has 280 sequences with 483 columns, 387 distinct patterns
194 parsimony-informative, 120 singleton sites, 169 constant sites
WARNING: Some sequence names are changed as follows:
METHBAC16____gi|1067220036|gb|OED29751.1| -> METHBAC16____gi_1067220036_gb_OED29751.1_
DPANN11____gi|1078648311|gb|AOV95429.1| -> DPANN11____gi_1078648311_gb_AOV95429.1_
METHBAC1____gi|1240218670|gb|PAV03438.1| -> METHBAC1____gi_1240218670_gb_PAV03438.1_
AUNC2____gi|1370716986|gb|PSN88901.1| -> AUNC2____gi_1370716986_gb_PSN88901.1_
THERMPLAS8____gi|471674883|gb|EMR74413.1| -> THERMPLAS8____gi_471674883_gb_EMR74413.1_
THAUM2____gi|407045572|gb|AFS80325.1| -> THAUM2____gi_407045572_gb_AFS80325.1_
DPANN15____gi|269986577|gb|EEZ92859.1| -> DPANN15____gi_269986577_gb_EEZ92859.1_
METHBAC7____gi|1168041138|gb|OQD59064.1| -> METHBAC7____gi_1168041138_gb_OQD59064.1_
DPANN3____gi|1276421034|gb|PIN85825.1| -> DPANN3____gi_1276421034_gb_PIN85825.1_
METHMIC20____gi|1081853615|gb|OFV68431.1| -> METHMIC20____gi_1081853615_gb_OFV68431.1_
CREN9____Fervi-gi|385805505|ref|YP-005841903.1| -> CREN9____Fervi-gi_385805505_ref_YP-005841903.1_
THEI2____gi|1008855596|gb|KYK38189.1| -> THEI2____gi_1008855596_gb_KYK38189.1_
DPANN7____gi|1209161928|gb|OWP53842.1| -> DPANN7____gi_1209161928_gb_OWP53842.1_
DPANN8____gi|1214173088|gb|ASI13363.1| -> DPANN8____gi_1214173088_gb_ASI13363.1_
TACKO1____gi|1249059196|gb|PCN51136.1| -> TACKO1____gi_1249059196_gb_PCN51136.1_
THAUM4____gi|329137211|gb|EGG41500.1| -> THAUM4____gi_329137211_gb_EGG41500.1_
THERMPLAS2____gi|509092941|gb|AGN26959.1| -> THERMPLAS2____gi_509092941_gb_AGN26959.1_
THERMPLAS3____gi|851215087|ref|WP-048111166.1| -> THERMPLAS3____gi_851215087_ref_WP-048111166.1_
METHMIC23____gi|1004826795|gb|KYC51882.1| -> METHMIC23____gi_1004826795_gb_KYC51882.1_
METHMIC9____gi|116665245|gb|ABK14272.1| -> METHMIC9____gi_116665245_gb_ABK14272.1_
EURYUNC3____gi|985664199|gb|KXA95886.1| -> EURYUNC3____gi_985664199_gb_KXA95886.1_
METHPY2____gi|1209289739|ref|WP-088336431.1| -> METHPY2____gi_1209289739_ref_WP-088336431.1_
THAUM7____gi|937514458|gb|ALI34945.1| -> THAUM7____gi_937514458_gb_ALI34945.1_
METHMIC3____gi|1240225289|gb|PAV09510.1| -> METHMIC3____gi_1240225289_gb_PAV09510.1_
EURYUNC1____UnEury2-gi|374723771|gb|EHR75851.1| -> EURYUNC1____UnEury2-gi_374723771_gb_EHR75851.1_
THAUM9____gi|675346204|gb|KFM19155.1| -> THAUM9____gi_675346204_gb_KFM19155.1_
AUNC1____gi|1370739337|gb|PSO09375.1| -> AUNC1____gi_1370739337_gb_PSO09375.1_
METHMIC22____gi|1232008032|gb|OYT67395.1| -> METHMIC22____gi_1232008032_gb_OYT67395.1_
BATH3____gi|921069029|gb|KON29679.1| -> BATH3____gi_921069029_gb_KON29679.1_
METHMIC18____gi|1232001974|gb|OYT61814.1| -> METHMIC18____gi_1232001974_gb_OYT61814.1_
HADE1____gi|974127774|gb|KUO42333.1| -> HADE1____gi_974127774_gb_KUO42333.1_
METHBAC4____gi|1297875626|gb|AUB60040.1| -> METHBAC4____gi_1297875626_gb_AUB60040.1_
METHMIC7____gi|630830353|gb|KCZ72064.1| -> METHMIC7____gi_630830353_gb_KCZ72064.1_
DPANN21____gi|485654978|gb|EOD42768.1| -> DPANN21____gi_485654978_gb_EOD42768.1_
METHMIC16____gi|1240229756|gb|PAV13340.1| -> METHMIC16____gi_1240229756_gb_PAV13340.1_
THEI1____gi|1008845239|gb|KYK28346.1| -> THEI1____gi_1008845239_gb_KYK28346.1_
DPANN5____gi|1277911660|gb|PIV13778.1| -> DPANN5____gi_1277911660_gb_PIV13778.1_
THERMPLAS9____gi|1209164552|gb|OWP56443.1| -> THERMPLAS9____gi_1209164552_gb_OWP56443.1_
METHBAC10____gi|757140299|ref|WP-042694541.1| -> METHBAC10____gi_757140299_ref_WP-042694541.1_
THAUM8____gi|1337718750|ref|WP-103287603.1| -> THAUM8____gi_1337718750_ref_WP-103287603.1_
METHBAC14____gi|1240222103|gb|PAV06633.1| -> METHBAC14____gi_1240222103_gb_PAV06633.1_
DPANN2____gi|1277976528|gb|PIV69428.1| -> DPANN2____gi_1277976528_gb_PIV69428.1_
EURYUNC2____gi|1101739036|gb|OIR22458.1| -> EURYUNC2____gi_1101739036_gb_OIR22458.1_
BATH2____gi|921074210|gb|KON34304.1| -> BATH2____gi_921074210_gb_KON34304.1_
THERMPLAS1____Mlumi-gi|518007558|ref|WP-019177766.1| -> THERMPLAS1____Mlumi-gi_518007558_ref_WP-019177766.1_
DPANN26____MSIBFv1-A1530021|ID:16557079|rps| -> DPANN26____MSIBFv1-A1530021_ID_16557079_rps_
ARCH1____gi|2649458|gb|AAB90113.1| -> ARCH1____gi_2649458_gb_AAB90113.1_
METHBAC3____gi|973120164|gb|KUK75469.1| -> METHBAC3____gi_973120164_gb_KUK75469.1_
THAUM5____gi|1056525836|ref|WP-067959346.1| -> THAUM5____gi_1056525836_ref_WP-067959346.1_
METHMIC21____gi|1343183869|gb|PPA80354.1| -> METHMIC21____gi_1343183869_gb_PPA80354.1_
BATH4____gi|939573137|gb|KPV63013.1| -> BATH4____gi_939573137_gb_KPV63013.1_
Gap/Ambiguity Composition p-value
1 METHMIC14____WP-048120079.1 72.26% passed 84.71%
2 CPRKAZ2____KKT52954.1 71.64% passed 99.61%
3 THERMCOC4____Tkoda-TK1500-AA-57641435-YP-183913.1 72.05% passed 82.44%
4 CPRMICR11____OGY23762.1 67.70% failed 0.68%
5 VERS2____ACCABHEM-00293 72.26% passed 76.76%
6 METHBAC16____gi_1067220036_gb_OED29751.1_ 72.26% passed 88.20%
7 CPRPARC16____OGM92637.1 69.77% passed 37.03%
8 METHPY1____Mkand-MK1477-AA-20094913-NP-614760.1 72.26% passed 33.16%
9 PVCCHLA2____CAH63970.1 72.46% passed 90.71%
10 PROZ1____WP_009849236.1 73.08% passed 68.13%
11 DPANN11____gi_1078648311_gb_AOV95429.1_ 72.05% passed 12.24%
12 METHBAC1____gi_1240218670_gb_PAV03438.1_ 72.46% passed 99.24%
13 METHMIC2____Mpalu-MCP-1645-AA-282164315-YP-003356700.1 72.26% passed 82.94%
14 DPANN20____Nequi-NEQ446-AA-41615231-NP-963729.1 71.84% passed 9.75%
15 AUNC2____gi_1370716986_gb_PSN88901.1_ 72.46% passed 60.28%
16 METHBAC17____WP-013413965.1 72.26% passed 86.66%
17 CPRMICR9____OGH17895.1 69.36% passed 61.40%
18 PROA3____OIQ05223.1 66.46% passed 40.75%
19 NITROR2____WP_013249281.1 73.08% passed 76.34%
20 THERMPLAS8____gi_471674883_gb_EMR74413.1_ 72.26% passed 87.75%
21 FCBCHLO1____WP_012499085.1 73.08% passed 86.81%
22 TERRFIR3____WP_010017477.1 72.88% passed 84.60%
23 ABOON1____Aboon-Aboo-1476-AA-289597148-YP-003483844.1 72.67% passed 88.56%
24 CPRMICR8____OGY23333.1 74.12% passed 97.76%
25 PROB2____WP_003059002.1 73.08% passed 96.18%
26 CREN10____Ssolf-SSO0068-AA-15897035-NP-341640.1 71.01% passed 38.48%
27 THAUM2____gi_407045572_gb_AFS80325.1_ 69.15% passed 68.87%
28 DPANN10____Nsali-J07AB56-07220-AA-339756411-EGQ39994.1 71.84% passed 29.48%
29 FCBBAC6____EKF54729.1 73.50% passed 91.13%
30 ASG4____OLS17871.1 72.26% passed 83.42%
31 VERS1____DHPNFBIM-00179 72.26% passed 96.30%
32 CPRMICR2____AKM79703.1 71.64% passed 45.26%
33 METHCOC2____WP-007044109.1 72.05% passed 48.68%
34 CREN6____Ihosp-Igni-0186-AA-156936981-YP-001434777.1 69.36% passed 42.17%
35 PORG9____WP_041394537.1 73.08% passed 99.73%
36 TERRFIR5____WP_023388352.1 73.08% passed 98.02%
37 TERRACT5____WP_004268556.1 66.25% passed 7.96%
38 ASG5____OLS26631.1 72.67% passed 67.44%
39 DPANN15____gi_269986577_gb_EEZ92859.1_ 72.88% passed 36.92%
40 FCBBAC3____WP_014020963.1 73.50% passed 77.47%
41 CREN5____Iaggr-Igag-0196-AA-305662637-YP-003858925.1 68.12% passed 31.31%
42 METHBAC7____gi_1168041138_gb_OQD59064.1_ 72.46% passed 99.71%
43 FCBBAC4____WP_009035633.1 73.50% passed 98.43%
44 DPANN3____gi_1276421034_gb_PIN85825.1_ 71.43% passed 69.53%
45 MODU1____GAK56328.1 63.35% passed 36.64%
46 HALO5____WP-004043023.1 72.67% passed 84.81%
47 METHMIC20____gi_1081853615_gb_OFV68431.1_ 70.60% passed 79.74%
48 THERMPLAS5____WP-009886729.1 72.26% passed 62.58%
49 TERRFIR4____WP_002262992.1 73.08% passed 98.61%
50 AIG1____Csubt-CSUB-C0320-AA-557693757-YP-008796811.1 72.88% passed 60.06%
51 CREN9____Fervi-gi_385805505_ref_YP-005841903.1_ 72.88% passed 99.67%
52 THEI2____gi_1008855596_gb_KYK38189.1_ 72.26% passed 99.02%
53 DEFER1____WP_013011539.1 73.29% passed 40.17%
54 DPANN7____gi_1209161928_gb_OWP53842.1_ 74.74% passed 83.81%
55 CPRBERK2____KKP89224.1 73.08% passed 22.81%
56 ASG1____OLS24587.1 71.64% passed 65.79%
57 CPRMICR1____OGD10246.1 71.84% passed 33.31%
58 CPRMICR12____OGY24213.1 74.12% passed 92.90%
59 FCBBAC2____WP_010664804.1 73.50% passed 71.91%
60 CPRSACC1____OIP86267.1 72.67% passed 88.77%
61 CPRPARC5____OGG60006.1 73.08% passed 65.18%
62 PORG1____WP_027940135.1 73.08% passed 78.53%
63 DPANN8____gi_1214173088_gb_ASI13363.1_ 67.49% failed 2.16%
64 TERRFIR7____WP_018249324.1 72.88% passed 97.77%
65 CHRY1____WP_027390750.1 73.29% passed 92.60%
66 TACKO1____gi_1249059196_gb_PCN51136.1_ 71.84% passed 74.63%
67 PORG2____WP_035515865.1 73.08% passed 84.03%
68 FCBBAC8____WP_016196062.1 73.50% passed 97.80%
69 METHMIC5____WP-014866480.1 72.46% passed 98.93%
70 THAUM12____TTTFn1000837-Thaumarchaeota-Fn1 70.39% passed 88.63%
71 PORG4____WP_026821376.1 73.08% passed 90.36%
72 FCBIG1____OGU19346.1 73.50% passed 99.10%
73 HALO4____WP-015763543.1 72.67% passed 38.18%
74 THAUM4____gi_329137211_gb_EGG41500.1_ 68.53% passed 46.23%
75 THERMPLAS2____gi_509092941_gb_AGN26959.1_ 72.46% passed 93.23%
76 HADE2____KUO39451.1 72.67% passed 85.97%
77 CPRPARC11____OIO29437.1 70.81% passed 23.64%
78 THERMPLAS3____gi_851215087_ref_WP-048111166.1_ 72.67% passed 93.13%
79 CPRPARC17____OGN05596.1 69.77% passed 67.11%
80 DPANN14____AR6-gwa2-scaffold-5107-30 69.57% passed 48.76%
81 CPRMICR5____OGE34670.1 69.15% passed 34.85%
82 METHMIC23____gi_1004826795_gb_KYC51882.1_ 72.26% passed 98.99%
83 CREN13____Tpend-Tpen-0277-AA-119719195-YP-919690.1 72.67% passed 30.19%
84 TERRACT7____WP_038503141.1 66.87% passed 92.57%
85 ARCH2____WP-015590248.1 72.67% passed 77.58%
86 CPRBERK4____AKM82746.1 71.64% passed 51.80%
87 HALO7____WP-005579709.1 72.67% passed 83.08%
88 THERMCOC3____WP-010885704.1 72.05% passed 58.12%
89 TERRACT4____WP_022910722.1 63.35% passed 44.91%
90 METHMIC9____gi_116665245_gb_ABK14272.1_ 72.67% passed 88.64%
91 DPANN24____scaffold-7131-8 72.26% failed 2.58%
92 PROE1____WP_084021775.1 72.67% passed 79.13%
93 CREN2____WP-022541837.1 67.49% passed 7.38%
94 ACID1____OFV89354.1 72.67% passed 54.86%
95 METHMIC13____WP-011306431.1 72.26% passed 75.64%
96 CPRMICR13____OGK55200.1 68.12% passed 37.05%
97 GRACI1____OIO75870.1 72.88% passed 97.66%
98 PROD3____WP_011552084.1 72.46% passed 84.32%
99 FCBBAC7____WP_020404605.1 73.50% passed 95.03%
100 HALO1____WP-011323136.1 72.67% passed 79.01%
101 EURYUNC3____gi_985664199_gb_KXA95886.1_ 72.05% passed 93.22%
102 METHBAC11____WP-058739649.1 72.46% passed 98.99%
103 METHMIC12____WP-011020646.1 72.26% passed 82.32%
104 THERMTO1____WP_012744853.1 72.26% passed 85.27%
105 CPRPARC6____WP_038322628.1 69.57% passed 10.97%
106 TERRCYA3____WP_006634975.1 71.64% passed 32.28%
107 TERRFIR2____WP_022794501.1 73.08% passed 96.27%
108 CPRBERK8____OGD64887.1 73.71% passed 38.06%
109 CREN3____TCAper001147-Aeropyrum-pernix-K1 67.49% failed 1.07%
110 TERRFIR6____WP_014262207.1 73.08% passed 98.99%
111 AMIN1____OGD13483.1 72.26% passed 71.27%
112 CREN12____Paero-PAE0674-AA-18312094-NP-558761.1 69.77% passed 82.23%
113 CPRMICR6____KKS84615.1 63.15% passed 30.35%
114 CPRPARC7____KKU07252.1 60.87% passed 59.37%
115 CPRMICR14____KKQ31303.1 71.43% passed 22.46%
116 FCBBAC5____WP_028121231.1 73.50% passed 62.36%
117 ASG2____OLS27733.1 72.26% passed 51.34%
118 METHCOC1____Mjann-MJ-0195-AA-15668367-NP-247163.1 71.84% passed 83.11%
119 PROO1____WP_028990533.1 73.08% passed 88.93%
120 FCBBAC1____WP_005791749.1 73.50% passed 98.88%
121 CPRPARC14____OGL90955.1 75.98% passed 8.86%
122 DPANN16____Pacid-BJBARM5-0749-AA-290559183-EFD92540.1 72.88% passed 19.36%
123 CPRBERK5____OIN90317.1 73.71% passed 48.63%
124 PROB5____WP_027469997.1 73.08% passed 90.27%
125 KOR1____Kcryp-Kcr-1588-AA-170291200-YP-001738016.1 71.22% passed 95.49%
126 METHMIC8____WP-013720017.1 72.67% passed 99.42%
127 PROA4____ABI61864.1 65.63% passed 59.59%
128 CPRPARC15____OGM01040.1 71.01% passed 75.85%
129 METHPY2____gi_1209289739_ref_WP-088336431.1_ 72.26% passed 38.97%
130 METHBAC2____WP-004030358.1 72.46% passed 97.17%
131 DPANN25____ODS36284.1 71.64% passed 80.44%
132 THAUM7____gi_937514458_gb_ALI34945.1_ 69.57% passed 85.19%
133 METHMIC15____Mmaze-MM-1757-AA-21227859-NP-633781.1 72.26% passed 91.41%
134 PORG5____WP_045100193.1 70.39% passed 97.15%
135 THERMODES1____WP_013907982.1 72.46% passed 98.60%
136 PVCCHLA1____OGN67495.1 72.67% passed 27.36%
137 SPIR2____WP_012388378.1 72.88% passed 82.91%
138 CPRMICR15____KKR52926.1 71.84% passed 87.90%
139 HALO2____WP-004516798.1 72.67% passed 50.17%
140 CREN8____Smari-Smar-0818-AA-126465718-YP-001040827.1 71.64% passed 10.89%
141 ACID4____WP_005035658.1 73.08% passed 67.57%
142 CPRMICR7____KKU26352.1 67.49% passed 52.99%
143 METHMIC3____gi_1240225289_gb_PAV09510.1_ 72.67% passed 93.65%
144 EURYUNC1____UnEury2-gi_374723771_gb_EHR75851.1_ 69.98% passed 95.02%
145 CPRBERK6____OIP06161.1 74.12% passed 17.80%
146 METHBAC12____WP-012955713.1 72.67% passed 98.15%
147 METHBAC15____WP-011406453.1 72.46% passed 96.00%
148 PORG3____WP_018716434.1 73.08% passed 38.89%
149 METHONAT1____WP-086637017.1 72.46% passed 35.64%
150 TERRCHLO1____WP_041454680.1 72.67% passed 66.50%
151 DPANN27____OYT54508.1 71.64% passed 40.58%
152 THAUM9____gi_675346204_gb_KFM19155.1_ 69.15% passed 76.87%
153 PROA2____WP_014130336.1 67.08% passed 95.44%
154 TERRCYA5____NP_680900.1 71.64% passed 18.86%
155 PROA7____WP_010407797.1 61.49% passed 20.83%
156 PROA1____WP_020399056.1 67.29% passed 62.19%
157 THERMCOC2____WP-010867657.1 72.05% passed 86.72%
158 METHBAC8____WP-067257208.1 72.46% passed 97.41%
159 AUNC1____gi_1370739337_gb_PSO09375.1_ 72.46% passed 85.50%
160 DPANN6____Macid-UNLARM2-0923-AA-255513543-EET89809.1 64.60% passed 45.37%
161 CPRPARC4____OGG38666.1 70.39% passed 33.40%
162 TERRCYA2____WP_015203272.1 71.64% passed 88.10%
163 TERRCYA4____WP_015195205.1 71.64% passed 59.68%
164 METHMIC22____gi_1232008032_gb_OYT67395.1_ 66.46% passed 36.49%
165 PROD4____WP_041584596.1 73.08% passed 81.54%
166 TERRACT3____WP_026935930.1 65.22% passed 61.59%
167 METHCOC4____WP-018154451.1 72.26% passed 91.16%
168 AQUI1____WP_012963220.1 69.77% passed 15.13%
169 ASG3____KKK46444.1 71.84% passed 82.87%
170 BATH3____gi_921069029_gb_KON29679.1_ 71.84% passed 94.07%
171 DPANN12____AR13-gwa2-scaffold-4294-3 86.13% passed 84.29%
172 METHMIC18____gi_1232001974_gb_OYT61814.1_ 87.16% passed 92.59%
173 DPANN9____Nj743-J07AB43-07240-AA-339757479-EGQ42736.1 71.43% passed 23.93%
174 DPANN4____AR10-GW2011-AR10-complete-1-862 70.81% passed 39.37%
175 TERRACT1____WP_013170535.1 66.67% passed 56.38%
176 PVCLEN1____OGV48579.1 72.05% passed 35.94%
177 TERRACT8____WP_019128897.1 72.88% passed 38.32%
178 HADE1____gi_974127774_gb_KUO42333.1_ 72.67% passed 87.78%
179 METHMIC17____WP-042685564.1 72.46% passed 69.92%
180 PROD1____WP_014242868.1 72.26% passed 67.47%
181 METHMIC1____WP-012037125.1 71.84% passed 90.16%
182 METHBAC4____gi_1297875626_gb_AUB60040.1_ 72.46% passed 99.11%
183 CPRBERK3____KKQ90386.1 74.53% passed 81.55%
184 CPRWWE1____OGC59791.1 71.22% passed 68.82%
185 CPRPARC9____OGI21360.1 70.81% failed 4.45%
186 CPRPARC12____OGI83554.1 74.12% passed 45.19%
187 TERRCHLO3____OGN95068.1 72.46% passed 87.78%
188 METHMIC7____gi_630830353_gb_KCZ72064.1_ 72.67% passed 99.75%
189 PORG7____WP_028672248.1 72.88% passed 83.72%
190 CPRBERK9____OGD64365.1 73.71% passed 98.92%
191 CREN11____WP-012186613.1 68.12% passed 90.37%
192 THAUM6____Ngarg-Ngar-c23930-AA-408404992-YP-006862975.1 67.91% passed 99.73%
193 DPANN23____PJC15831.1 72.26% failed 2.58%
194 CPRBERK7____OIP06883.1 73.50% passed 95.05%
195 TERRACT2____WP_021012131.1 64.39% passed 23.22%
196 METHMIC6____WP-048067601.1 72.46% passed 99.89%
197 DPANN17____AR15-GW2011-AR15-1-364 72.05% passed 72.89%
198 DPANN1____PIY36118.1 71.01% passed 95.04%
199 THERMCOC1____WP-011012791.1 72.05% passed 66.88%
200 CPRPARC2____OGF73378.1 72.67% passed 51.24%
201 DPANN13____AR1-GW2011-AR1-4-18 71.22% passed 47.76%
202 CPRMICR4____OGD85749.1 76.60% passed 95.15%
203 DPANN21____gi_485654978_gb_EOD42768.1_ 72.67% passed 48.95%
204 FCBGEM1____OGU26403.1 90.89% passed 64.35%
205 TERRTEN1____WP_011183390.1 72.88% passed 68.33%
206 DPANN18____AR20-GW2011-AR20-complete-1-798 71.64% passed 84.85%
207 CPRPARC3____OGG37738.1 72.46% passed 14.22%
208 TERRFIR1____WP_000079988.1 73.08% passed 88.88%
209 NITROR1____OGW50342.1 72.46% passed 97.68%
210 DPANN22____AMD29689.1 72.67% passed 41.73%
211 PORG8____WP_026471335.1 73.50% passed 75.64%
212 SPIR1____WP_013113494.1 72.67% passed 51.71%
213 THERMPLAS4____WP-048100781.1 72.26% passed 96.83%
214 AQUI2____ADU96351.1 71.84% passed 89.88%
215 METHMIC16____gi_1240229756_gb_PAV13340.1_ 72.26% passed 87.96%
216 THEI1____gi_1008845239_gb_KYK28346.1_ 72.26% passed 71.93%
217 PROB1____WP_003814889.1 73.08% passed 89.58%
218 CPRMICR3____OGD79142.1 73.08% passed 68.84%
219 HALO6____WP-005557947.1 72.67% passed 93.60%
220 FCBZIX1____KPL04261.1 73.08% passed 71.80%
221 CREN1____WP-048813007.1 66.25% passed 60.83%
222 PROD2____WP_006964688.1 72.88% passed 68.59%
223 METHCOC3____WP-011171269.1 72.26% passed 85.80%
224 METHBAC9____WP-066973058.1 72.26% passed 98.78%
225 THERMPLAS6____WP-011177125.1 72.46% passed 24.75%
226 CPRPARC13____OGL87599.1 72.46% passed 20.87%
227 PROA5____WP_014745306.1 66.05% passed 94.95%
228 CPRSACC2____OGL37775.1 72.67% failed 1.61%
229 DPANN5____gi_1277911660_gb_PIV13778.1_ 69.57% passed 33.00%
230 CREN7____WP-075049636.1 69.36% failed 4.34%
231 ACID2____OFW02065.1 73.08% passed 63.02%
232 METHMIC10____WP-048193212.1 72.26% passed 89.80%
233 METHBAC6____Mtherm-MTH39-AA-15678069-NP-275183.1 41.61% passed 33.95%
234 THERMPLAS7____WP-010917394.1 72.67% passed 64.37%
235 CPRMICR10____OIO45070.1 70.39% passed 86.43%
236 CPRPER2____OIO55511.1 71.84% passed 98.88%
237 METHMIC11____WP-013037982.1 72.26% passed 98.90%
238 THERMPLAS9____gi_1209164552_gb_OWP56443.1_ 71.84% passed 87.22%
239 CPRPER1____OIO51906.1 69.98% passed 98.09%
240 TERRDEI1____WP_011530861.1 72.88% passed 32.50%
241 CPRPARC10____KKQ44510.1 60.04% failed 0.05%
242 METHBAC10____gi_757140299_ref_WP-042694541.1_ 72.46% passed 99.60%
243 THAUM8____gi_1337718750_ref_WP-103287603.1_ 68.94% passed 83.80%
244 PROA6____WP_010265839.1 69.36% failed 0.12%
245 METHBAC14____gi_1240222103_gb_PAV06633.1_ 72.46% passed 98.26%
246 ACID3____WP_014267734.1 72.88% passed 73.11%
247 THAUM1____Csymb-CENSYa-1489-AA-118576672-YP-876415.1 69.15% passed 90.00%
248 THAUM11____TTTBS4001139-Thaumarchaeota-archaeon-BS4 71.43% passed 96.15%
249 HALO3____WP-010902818.1 72.67% passed 81.13%
250 DPANN2____gi_1277976528_gb_PIV69428.1_ 71.01% passed 95.04%
251 METHABC____WP-013295348.1 72.46% passed 96.68%
252 PORG6____WP_023495188.1 72.88% passed 94.50%
253 TERRMEL1____AOR38500.1 72.88% passed 92.02%
254 CPRDOJK1____KKQ36270.1 73.29% passed 34.71%
255 EURYUNC2____gi_1101739036_gb_OIR22458.1_ 72.46% passed 99.46%
256 TERRFIR8____WP_004695188.1 73.08% passed 98.45%
257 BATH2____gi_921074210_gb_KON34304.1_ 71.84% passed 84.63%
258 SYNE1____YP_003318030.1 72.67% passed 48.92%
259 THERMPLAS1____Mlumi-gi_518007558_ref_WP-019177766.1_ 72.46% passed 70.87%
260 DPANN26____MSIBFv1-A1530021_ID_16557079_rps_ 72.26% passed 18.71%
261 ARCH1____gi_2649458_gb_AAB90113.1_ 72.05% passed 93.84%
262 CREN4____Hbuty-Hbut-0533-AA-124027418-YP-001012738.1 67.29% passed 7.21%
263 PORG10____WP_091334577.1 73.08% passed 93.43%
264 CPRPARC8____KKU27188.1 79.09% passed 93.84%
265 METHMIC4____WP-011833613.1 72.67% passed 97.15%
266 PROB3____WP_013292340.1 73.08% passed 91.75%
267 CPRMICR16____OGM30273.1 71.64% passed 92.42%
268 TERRACT6____WP_013980700.1 73.08% passed 68.84%
269 PVCOMN1____OIO38018.1 71.43% passed 96.38%
270 METHBAC3____gi_973120164_gb_KUK75469.1_ 72.46% passed 99.30%
271 THAUM3____Nmari-Nmar-0425-AA-161527933-YP-001581759.1 69.15% passed 76.87%
272 PROB4____WP_013440884.1 73.08% passed 50.39%
273 FUSO1____NP_603235.1 72.46% passed 97.95%
274 WIRTH1____OIP99172.1 70.39% passed 60.81%
275 CPRPARC1____KKQ64960.1 69.77% passed 74.28%
276 METHBAC13____WP-004033272.1 72.46% passed 99.05%
277 THAUM5____gi_1056525836_ref_WP-067959346.1_ 69.36% passed 95.34%
278 CPRKAZ1____AKM84753.1 71.64% passed 70.52%
279 METHMIC21____gi_1343183869_gb_PPA80354.1_ 72.26% passed 35.51%
280 BATH4____gi_939573137_gb_KPV63013.1_ 71.64% passed 97.44%
WARNING: 279 sequences contain more than 50% gaps/ambiguity
**** TOTAL 71.62% 10 sequences failed composition chi2 test (p-value<5%; df=19)
Reading input tree file pteryxroot.tre ... rooted tree
ERROR: modelliemarkov.cpp:334: virtual void ModelLieMarkov::init(const char *, std::__cxx11::string, StateFreqType, std::__cxx11::string): Assertion `NUM_RATES==getNumRateEntries()' failed.
ERROR: STACK TRACE FOR DEBUGGING:
ERROR:
ERROR: *** IQ-TREE CRASHES WITH SIGNAL ABORTED
ERROR: *** For bug report please send to developers:
ERROR: *** Log file: Genfam1hmmalignment.faa.log
ERROR: *** Alignment files (if possible)