recipe_ocean_example.yml

# ESMValTool
# recipe_ocean_example.yml
---
documentation:
  title: Ocean physics analysis suite

  description: |
    Recipe to demonstrate several simple plots based on the monthly ocean
    temperature. Please use this file as a template for adding additional
    fields into the ocean. This work based on the BGC-val toolkit GMD-2018-103.

  authors:
    - demora_lee

  maintainer:
    - demora_lee

  references:
    - demora2018gmd

  projects:
    - ukesm


datasets:
  # working datasets
  # - {dataset: CanESM2, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
  # - {dataset: GISS-E2-H, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
  # - {dataset: HadGEM2-AO, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
  # - {dataset: HadCM3, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
  # - {dataset: CanCM4, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
  # - {dataset: CSIRO-Mk3-6-0, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}

  - {dataset: HadGEM2-CC, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
  - {dataset: HadGEM2-ES, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}

  #####
  # Data with Errors right now -June 2018
  ###
  # Problem with times
#  - {dataset: MIROC-ESM, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
#  - {dataset: MIROC-ESM-CHEM, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}

  # Unstructured grids
 # - {dataset: MPI-ESM-LR, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2003}
 # - {dataset: MPI-ESM-MR, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
#  - {dataset: ACCESS1-0, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}
#  - {dataset: ACCESS1-3, project: CMIP5, mip: Omon, exp: historical, ensemble: r1i1p1, start_year: 2001, end_year: 2004}

# TODO: All multi-model statistics are turned off until the preprocessor order is fixed.

preprocessors:
  # --------------------------------------------------
  # Time series preprocessors
  # --------------------------------------------------
  prep_timeseries_1: # For 2D fields
    custom_order: true
    area_statistics:
      operator: mean
    multi_model_statistics:
      span: overlap
      statistics: [mean ]

  prep_timeseries_2: # For specific levels of 3D fields
    custom_order: true
    extract_levels:
      levels: [0., 10., 100., 1000.]
      scheme: linear_extrapolate
    area_statistics:
      operator: mean
    multi_model_statistics:
      span: overlap
      statistics: [mean ]

  prep_timeseries_3: # For regional fields
    custom_order: true
    extract_region:
      start_longitude: -80.
      end_longitude: 30.
      start_latitude: -80.
      end_latitude: 80.
    area_statistics:
      operator: mean
    multi_model_statistics:
      span: overlap
      statistics: [mean ]

  prep_timeseries_4: # For regional fields at depth
    custom_order: true
    extract_levels:
      levels: [0., 10., 100., 1000.]
      scheme: linear_extrapolate
    extract_region:
      start_longitude: -80.
      end_longitude: 30.
      start_latitude: -80.
      end_latitude: 80.
    area_statistics:
      operator: mean
    multi_model_statistics:
      span: overlap
      statistics: [mean ]

  prep_timeseries_5: # For Global Volume Averaged
    custom_order: true
    volume_statistics:
      operator: mean
    multi_model_statistics:
      span: overlap
      statistics: [mean ]

  prep_timeseries_6: # For regional volume averaged
    custom_order: true
    extract_region:
      start_longitude: -80.
      end_longitude: 30.
      start_latitude: -80.
      end_latitude: 80.
    volume_statistics:
      operator: mean
    multi_model_statistics:
      span: overlap
      statistics: [mean ]

  prep_timeseries_7: # For regional volume averaged (at the surface)
    custom_order: true
    extract_region:
      start_longitude: -80.
      end_longitude: 30.
      start_latitude: -80.
      end_latitude: 80.
    extract_volume:
      z_min: 0.
      z_max: 100.
    volume_statistics:
      operator: mean
    multi_model_statistics:
      span: overlap
      statistics: [mean ]


  # --------------------------------------------------
  # Map preprocessors - 2D fields
  # --------------------------------------------------
  prep_map_1: # For Global 2D fields
    climate_statistics:
      operator: mean

  prep_map_2: # For Global 2D fields with regridding
    custom_order: true
    regrid:
      target_grid: 1x1
      scheme: linear
    climate_statistics:
      operator: mean
    # multi_model_statistics:
    #   span: overlap
    #   statistics: [mean ]

  prep_map_3: # For specific levels of 3D fields with regrid
    custom_order: true
    extract_levels:
      levels: [0., 10., 100., 1000.,]
      scheme: linear_extrapolate
    climate_statistics:
      operator: mean
    regrid:
      target_grid: 1x1
      scheme: linear
    # multi_model_statistics:
    #   span: overlap
    #   statistics: [mean ]

  prep_map_4: # For a specific region with regrid
    custom_order: true
    extract_region:
      start_longitude: -80.
      end_longitude: 30.
      start_latitude: -80.
      end_latitude: 80.
    climate_statistics:
      operator: mean
    regrid:
      target_grid: 1x1
      scheme: linear
    # multi_model_statistics:
    #   span: overlap
    #   statistics: [mean ]

  prep_map_5: # For a specific region at depth levels,
    custom_order: true
    extract_levels:
      levels: [0., 10., 100., 1000.,]
      scheme: linear_extrapolate
    climate_statistics:
      operator: mean
    extract_region:
      start_longitude: -80.
      end_longitude: 30.
      start_latitude: -80.
      end_latitude: 80.
    regrid:
      target_grid: 1x1
      scheme: linear
    # multi_model_statistics:
    #   span: overlap
    #   statistics: [mean ]

  # --------------------------------------------------
  # Transects preprocessors
  # --------------------------------------------------
  prep_transect_1: # For extracting along a trajectory
    climate_statistics:
      operator: mean
    extract_trajectory:
      latitudes: [-5., 5.,]
      longitudes: [332.,332.]
      number_points: 4              # VERY SLOW with high numbers!

  prep_transect_2: # For extracting a transect
    climate_statistics:
      operator: mean
    extract_transect: # Pacific Equator
      latitude: 0.
      longitude: [120., 300.]

  prep_transect_3: # For extracting a transect
    climate_statistics:
      operator: mean
    extract_transect: # Atlantic Meridional Transect
      latitude: [-50.,50.]
      longitude: 332.

  # --------------------------------------------------
  # Depth-profile preprocessors
  # --------------------------------------------------
  prep_profile_1: # For a global profile
    area_statistics:
      operator: mean

  prep_profile_2: # For a regional profile
    extract_region:
      start_longitude: 0.
      end_longitude: 20.
      start_latitude: -30.
      end_latitude: 30.
    extract_volume:
      z_min: 0.
      z_max: 100.
    area_statistics:
      operator: mean


  # --------------------------------------------------
  # Depth-profile preprocessors
  # --------------------------------------------------
  prep_depth_integration_1: # For a 2D map global profile
    depth_integration:
    climate_statistics:
      operator: mean


diagnostics:
  # --------------------------------------------------
  # Depth integrated diagnostics
  # --------------------------------------------------
  diag_depthInt_1:
    description: Global Ocean Surface mean timeseries
    variables:
      thetao: # Temperature ocean
        preprocessor: prep_depth_integration_1
    scripts:
      Global_Ocean_DepthIntegration_map:
        script: ocean/diagnostic_maps.py

  # --------------------------------------------------
  # Time series diagnostics
  # --------------------------------------------------
  diag_timeseries_1:
    description: Global Ocean Surface mean timeseries
    variables:
      tos: # Temperature ocean surface
        preprocessor: prep_timeseries_1
    scripts:
      Global_Ocean_Surface_mean_timeseries: &Global_Ocean_Surface_mean_timeseries
        script: ocean/diagnostic_timeseries.py

  diag_timeseries_2:
    description: Global Ocean Depth Layers mean timeseries
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_timeseries_2
    scripts:
      Global_Ocean_DepthLayers_mean_timeseries: &Global_Ocean_DepthLayers_mean_timeseries
        script: ocean/diagnostic_timeseries.py

  diag_timeseries_3:
    description: Regional scale surface diagnostics
    variables:
      tos: # Temperature ocean surface
        preprocessor: prep_timeseries_3
    scripts:
      Regional_Ocean_Surface_mean_timeseries: &Regional_Ocean_Surface_mean_timeseries
        script: ocean/diagnostic_timeseries.py

  diag_timeseries_4:
    description: Regional scale diagnostics
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_timeseries_4
    scripts:
      Regional_Ocean_DepthLayers_mean_timeseries: &Regional_Ocean_DepthLayers_mean_timeseries
        script: ocean/diagnostic_timeseries.py

  diag_timeseries_5:
    description: Global Volume average diagnostics
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_timeseries_5
    scripts:
      Global_VolumeAverage_Ocean_Physics_timeseries: &Global_VolumeAverage_Ocean_Physics_timeseries
        script: ocean/diagnostic_timeseries.py

  diag_timeseries_6:
    description: Regional Volume average diagnostics
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_timeseries_6
    scripts:
      Regional_VolumeAverage_Ocean_Physics_timeseries: &Regional_VolumeAverage_Ocean_Physics_timeseries
        script: ocean/diagnostic_timeseries.py

  diag_timeseries_7:
    description: Regional Volume to 100m depth average diagnostics
    variables:
      thetao: # Temperature ocean 3D averaged over top 100m
        preprocessor: prep_timeseries_7
    scripts:
      Regional_Volume100mAverage_Ocean_Physics_timeseries: &Regional_Volume100mAverage_Ocean_Physics_timeseries
        script: ocean/diagnostic_timeseries.py

  # --------------------------------------------------
  # Map diagnostics
  # --------------------------------------------------
  diag_map_1:
    description: Global Ocean Surface map
    variables:
      tos: # Temperature ocean surface
        preprocessor: prep_map_1
    scripts:
      Global_Ocean_Surface_mean_map: &Global_Ocean_Surface_mean_map
        script: ocean/diagnostic_maps.py

  diag_map_2:
    description: Global Ocean Surface regridded map
    variables:
      tos: # Temperature ocean surface
        preprocessor: prep_map_2
    scripts:
      Global_Ocean_Surface_regrid_map: &Global_Ocean_Surface_regrid_map
        script: ocean/diagnostic_maps.py

  diag_map_3:
    description: Global Ocean Depth Layers regridded map
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_map_3
    scripts:
      Global_Ocean_DepthLayers_regrid_map: &Global_Ocean_DepthLayers_regrid_map
        script: ocean/diagnostic_maps.py

  diag_map_4:
    description: Regional scale surface regridded map
    variables:
      tos: # Temperature ocean surface
        preprocessor: prep_map_4
    scripts:
      Regional_Ocean_Surface_regrid_map: &Regional_Ocean_Surface_regrid_map
        script: ocean/diagnostic_maps.py

  diag_map_5:
    description: Regional scale depth layers regridded map
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_map_5
    scripts:
      Regional_Ocean_DepthLayers_mean_map: &Regional_Ocean_DepthLayers_mean_map
        script: ocean/diagnostic_maps.py

  # --------------------------------------------------
  # Transects diagnostics
  # --------------------------------------------------
  diag_transect_1:
    description: Extracting along a trajectory
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_transect_1
    scripts:
      Regional_Ocean_DepthLayers_regrid_transect: &Regional_Ocean_DepthLayers_regrid_transect
        script: ocean/diagnostic_transects.py

  diag_transect_2:
    description: Extracting along a line with regridding and multimodle mean
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_transect_2
    scripts:
      Regional_Ocean_DepthLayers_slice_regrid_mmmean_transect: &Regional_Ocean_DepthLayers_slice_regrid_mmmean_transect
        script: ocean/diagnostic_transects.py

  diag_transect_3:
    description: Extracting along a line with regridding and multimodel mean
    variables:
      thetao: # Temperature ocean 3D
        preprocessor: prep_transect_3
    scripts:
      Regional_Ocean_DepthLayers_AMTslice_regrid_mmmean_transect: &Regional_Ocean_DepthLayers_AMTslice_regrid_mmmean_transect
        script: ocean/diagnostic_transects.py


  # --------------------------------------------------
  # Depth-profile diagnostics
  # --------------------------------------------------
  diag_profile_1:
    description: Global Ocean mean profile
    variables:
      thetao: # Temperature ocean surface
        preprocessor: prep_profile_1
    scripts:
      Global_Ocean_mean_profile: &Global_Ocean_mean_profile
        script: ocean/diagnostic_profiles.py

  diag_profile_2:
    description: Regional Ocean mean profile
    variables:
      thetao: # Temperature ocean surface
        preprocessor: prep_profile_2
    scripts:
      Regional_Ocean_mean_profile: &Regional_Ocean_mean_profile
        script: ocean/diagnostic_profiles.py